[Rd] getting a vector of unown size
Marcelo Kittlein
kittlein at mdp.edu.ar
Fri Sep 4 23:35:46 CEST 2015
Hi all!
I have written some code in C for simulating the fate of population
using a dll loaded in R. During this simulation the population may go
extinct such that the length of its trajectory is unknown beforehand. I
wonder there is a way to define the size of the result in C and make it
known to R to get the vector appropriately.
I have defined the output size very much larger than necessary to hold
the result and then shrink the vector to the size where meaningful
values occur, but this waste much resources and time unnecessarily.
The C code
#include <stdlib.h>
#include <math.h>
double min(double a, double b)
{
if(a>b)
return b;
else
return a;
}
double unirand()
{
return (rand()+1.0)/(RAND_MAX+1.0);
}
void RndSBDdemography(double *b, double *d, double *a, double *c, double
*No, double *tmax, double *tiempo, double *Nind)
{
double tb, td, n;
int bc=0;
tiempo[0]=1.0;
Nind[0] = *No;
// This loop generates output of variable and a priori unknown size
while (Nind[bc] >= 2 && tiempo[bc] <= *tmax)
{
bc = bc + 1;
tb = -(1 / (*b - *a * Nind[bc-1])) * log(unirand());
td = -(1 / (*d + *c * Nind[bc-1])) * log(unirand());
tiempo[bc]= tiempo[bc-1] + min(tb, td)/ Nind[bc-1];
if (tb < td) n=1.0 ; else n= -1.0;
Nind[bc] = Nind[bc-1] + n;
}
}
The definition of the function call in R
RndSBDdemography = function(b=b,d=d,a=a,c=c, No=No, tmax=tmax){
tiempo=numeric(100000);
Nind=numeric(100000);
out=.C("RndSBDdemography",
b=as.double(b),
d=as.double(d),
a=as.double(a),
c=as.double(c),
No=as.double(No),
tmax=as.double(tmax),
tiempo=as.double(tiempo),
Nind=as.double(Nind)
)
# trim the output to a size where meaningful values occur
indi=which(out$tiempo!=0)
return(data.frame(tiempo=out$tiempo[indi], Nind=out$Nind[indi]))
}
Hope someone can give a hint on this.
Best Regards
Marcelo Kittlein
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