[Rd] mclapply memory leak?
Toby Hocking
tdhock5 at gmail.com
Wed Sep 2 19:12:32 CEST 2015
Dear R-devel,
I am running mclapply with many iterations over a function that modifies
nothing and makes no copies of anything. It is taking up a lot of memory,
so it seems to me like this is a bug. Should I post this to
bugs.r-project.org?
A minimal reproducible example can be obtained by first starting a memory
monitoring program such as htop, and then executing the following code
while looking at how much memory is being used by the system
library(parallel)
seconds <- 5
N <- 100000
result.list <- mclapply(1:N, function(i)Sys.sleep(1/N*seconds))
On my system, memory usage goes up about 60MB on this example. But it does
not go up at all if I change mclapply to lapply. Is this a bug?
For a more detailed discussion with a figure that shows that the memory
overhead is linear in N, please see
https://github.com/tdhock/mclapply-memory
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu precise (12.04.5 LTS)
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel graphics utils datasets stats grDevices methods
[8] base
other attached packages:
[1] ggplot2_1.0.1 RColorBrewer_1.0-5 lattice_0.20-33
loaded via a namespace (and not attached):
[1] Rcpp_0.11.6 digest_0.6.4 MASS_7.3-43
[4] grid_3.2.2 plyr_1.8.1 gtable_0.1.2
[7] scales_0.2.3 reshape2_1.2.2 proto_1.0.0
[10] labeling_0.2 tools_3.2.2 stringr_0.6.2
[13] dichromat_2.0-0 munsell_0.4.2 PeakSegJoint_2015.08.06
[16] compiler_3.2.2 colorspace_1.2-4
[[alternative HTML version deleted]]
More information about the R-devel
mailing list