[Rd] R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
Michael Felt
aixtools at gmail.com
Wed Dec 30 09:58:06 CET 2015
On 2015-12-29 11:02, Michael Felt wrote:
> This seems to be a problem that goes back a long time - and I hope
> someone who understands what tre is suppossed to be doing will look at
> this.
>
> A short history of other people who have reported on this on different
> versions of AIX. I shall only add that I get the same results on AIX
> 5.3 TL7, AIX 6.1 TL9 and AIX 7.1 TL3.
>
> Basically, with settings that work for AIX and 32-bit - the only
> changes being
> -maix32 becomes -maix64
> and
> export OBJECT_MODE=32 becomes export OBJECT_MODE=64
>
> Then to shorten the 'make' bla bla, first run just make, then
>
> cd src/library/tools
> make -s sysdata
>
> http://article.gmane.org/gmane.comp.lang.r.devel/38817/match=package+tools+malformed
>
> http://article.gmane.org/gmane.comp.lang.r.devel/36886/match=package+tools+malformed
>
> http://article.gmane.org/gmane.comp.lang.r.devel/23372/match=package+tools+malformed
> Date: 2010-01-25 06:55:41 GMT (5 years, 48 weeks, 1 day, 20 hours and
> 30 minutes ago)
>
> To that, to get debug data, I have
>
> * added -DTRE_DUGUG to src/extra/tre/Makefile # ALL_CFLAGS =
> $(ALL_CFLAGS_LO) -DTRE_DEBUG
> * rm src/extra/tre/tre-match-parallel.o
> * find . -name \*.so -exec rm {} \;
> * make
> * cd src/library/tools
> * make -s sysdata
>
> Attached are the two script files of the screen output. The 32-bit one
> is more verbose - and contains magically lines such as:
> found match 3037fd14 (while "found" does not occur in the 64-bit
> output)
>
> root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]wc
> /tmp/sysdata.??.*
> 4730 14123 139916 /tmp/sysdata.32.text
> 1312 3688 40528 /tmp/sysdata.64.text
> 6042 17811 180444 total
>
> root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]grep -c
> found /tmp/sysdata.??.*
> /tmp/sysdata.32.text:19
> /tmp/sysdata.64.text:0
>
>
> Hope this brings us (or me), closer to a resolution to an old concern.
>
> And, best wishes for the new year!
>
> Michael
>
>
Still hoping for someones curiosity/willingness.
The differences show up in the first comparision that is made (of the
string "3.2.3" it seems) - 32-bit is on the left, 64-bit on the right.
Script command is started on Tue Dec 29 08:39:16 UTC
2015. | Script command is started on Tue Dec 29
08:39:56 UTC 2015.
root at x069:[/data/prj/cran/32/R-aix-3.2.3/src/library/tools]make -s
sysdata |
root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]make -s sysdata
installing
'sysdata.rda' |
installing 'sysdata.rda'
tre_tnfa_run_parallel, input type
1 | tre_tnfa_run_parallel,
input type 1
length:
-1
| length: -1
pos:chr/code | states and
tags | pos:chr/code |
states and tags
-------------+------------------------------------------------
| -------------+------------------------------------------------
init > 30380200 3038014c
30380098 | init >
110cc3040 110cc2f28 110cc2e10
match end offset =
-1 | match end
offset = -1
tre_tnfa_run_parallel, input type
1 | tre_tnfa_run_parallel,
input type 1
length:
-1
| length: -1
pos:chr/code | states and
tags | pos:chr/code |
states and tags
-------------+------------------------------------------------
| -------------+------------------------------------------------
init >
3037fb88
| init > 110cc3310
0: 3/00051 |
3037fb88/0:0 | 0:
3/00051 | 110cc3310/0:0
1: ./00046 |
3037fb88/0:0 | 1:
./00046 | 110cc3310/0:0
init >
3037fb88
| init > 110cc3310
1: ./00046 |
3037fb88/0:1 | 1:
./00046 | 110cc3310/0:1
2: 2/00050 |
3037fb88/0:1 | 2:
2/00050 | 110cc3310/0:1
assertion
failed |
assertion failed
init >
3037fb88
| init > 110cc3310
2: 2/00050 | 3037fc18/0:1
3037fb88/0:2 | 2: 2/00050 |
110cc33f0/0:1 110cc3310/0:2
3: ./00046 | 3037fc18/0:1
3037fb88/0:2 | 3: ./00046 |
110cc33f0/0:1 110cc3310/0:2
assertion failed *** DIFFERENCE
*** | init > 110cc3310
init >
3037fb88
| 3: ./00046 | 110cc3310/0:3
3: ./00046 | 3037fc18/0:1
3037fb88/0:3 | 4: 3/00051 |
110cc3310/0:3
4: 3/00051 | 3037fc18/0:1
3037fb88/0:3 | assertion failed
assertion
failed |
init > 110cc3310
init >
3037fb88
| 4: 3/00051 | 110cc33f0/0:3 110cc3310/0:4
4: 3/00051 | 3037fc18/0:3
3037fb88/0:4 | 5: /00000 |
110cc33f0/0:3 110cc3310/0:4
5: /00000 | 3037fc18/0:3 3037fb88/0:4 | init > 110cc3310
found match 3037fd14 *** DIFFERENCE *** | match
end offset = -1
match end offset = 5 *** DIFFERENCE *** |
tre_tnfa_run_parallel, input type 1
tre_tnfa_run_parallel, input type
1 | length: -1
length:
-1
| pos:chr/code | states and tags
pos:chr/code | states and
tags |
-------------+------------------------------------------------
-------------+------------------------------------------------
| init > 110cc4780 110cc4668 110cc4550
init > 303811c0 3038110c
30381058 | match end offset
= -1
match end offset =
-1 |
tre_tnfa_run_parallel, input type 1
tre_tnfa_run_parallel, input type
1 | length: -1
length:
-1
| pos:chr/code | states and tags
pos:chr/code | states and
tags |
-------------+------------------------------------------------
-------------+------------------------------------------------
| init > 110cc5700 110cc55e8 110cc54d0
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