[Rd] R_PROFILE_USER

[arnaud gaboury]

On Sat, Dec 5, 2015 at 9:43 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
>
> On Sat, Dec 5, 2015, 9:39 PM peter dalgaard <pdalgd at gmail.com> wrote:
>
>
>> On 05 Dec 2015, at 18:07 , arnaud gaboury <arnaud.gaboury at gmail.com>
>> wrote:
>>
>> In my shell environment, I have set a path to R_PROFILE_USER. The
>> file, Rprofile.R, is a collection of small hacks.
>>
>> I want to build rstudio-server from source. Best is to $ unset
>> R_PROFILE_USER before. Unfortunately, this has no effect on my system.
>>
>> -----------------------------------------------
>> poisonivy at poppy ➤➤ ~ % R
>>
>> *** Successfully loaded .Rprofile ***
>>
>> Welcome back poisonivy
>> working directory is: /home/poisonivy
>> poisonivy at poppy [R]
>> -------------------------------------
>>
>> As you can see, R is still behaving like the profile is used. What is
>> annoying, is that Cmake will at one point not find my LibR. Error
>> message: missing LIBR_LIBRARIES). The Cmake command is this one:
>>
>> -----------------------------------------
>> % R --slave --no-save -e "cat(R.home('lib'))"
>>
>> *** Successfully loaded .Rprofile ***
>>
>> /usr/lib64/R/libGoodbye poisonivy Sat Dec  5 18:03:06 2015
>> ----------------------------------------------
>>
>> and as you can see, the result is polluated by my profile. I can't
>> edit Cmake file to add "--vanilla" as they are generated each time I
>> start cmake.
>>
>> Even deleting my Rprofile.R file, the environment still persists. I
>> have no idea why this behavior.
>>
>> Any hints why I can't unset my profile user ?
>
> Umm, it said that it loaded .Rprofile, not Rprofile.R. Any chance that you
> have similar code in two places? (~/.Rprofile and ./.Rprofile being the most
> obvious suspects).
>
> That is my first thought. As for the file, I made a typo in my post. It is
> indeed Rprofile.r ( r lower case). That could explain the welcome message.

I finally found the culprite:

/usr/lib64/R/etc/Rprofile.site

:-)
>
>
> -pd
>
>>
>> Thank you.
>> --
>>
>> google.com/+arnaudgabourygabx
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>
> --
> Peter Dalgaard, Professor,
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com
>
>
>
>
>
>



-- 

google.com/+arnaudgabourygabx