[Rd] parLapply fails to detect default cluster?
Martin Morgan
mtmorgan at fhcrc.org
Tue Aug 21 15:50:51 CEST 2012
invoking parLapply without a cluster fails to find a previously
registered cluster
> library(parallel)
> setDefaultCluster(makePSOCKcluster(2))
> parLapply(X=1:2, fun=function(...) {})
Error in cut.default(i, breaks) : invalid number of intervals
This is because in parLapply length(cl) is determined before
defaultCluster(cl) is called. By inspection, this appears to be true of
other high-level functions, but ironically not of parApply.
In defaultCluster, t would also be helpful to check that the detected
cluster, user-supplied or other, is a valid cluster.
diff attached.
Martin
--
Computational Biology / Fred Hutchinson Cancer Research Center
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Phone: (206) 667-2793
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