[Rd] R-beta_2010-10-02_r53128 fails to compile on FreeBSD

[Peter Dalgaard]

On 10/03/2010 04:24 PM, Rainer Hurling wrote:
> I tried to compile R-beta_2010-10-02_r53128 on FreeBSD 9.0-CURRENT 
> (amd64) with gcc-4.4.5 and it fails:

Thanks for the report. WIFEXITED/WEXITSTATUS are usually defined in
<sys/wait.h> (usually /usr/include/sys/wait.h). Do you have any
indication that this might be skipped? (configure output, etc.)

I'm not quite sure by which mechanism gcc is expected to include
sys/wait.h, but the offending code is inside

#ifdef HAVE_SYS_WAIT_H

which configure is supposed to set only if it is available and POSIX
compatible.

Any chance you switched platform features (e.g. upgraded gcc) without
reconfiguring?

-pd

> 
> -----------------------------------------
> gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
> -I../../src/extra/pcre  -I../../src/extra   -I. -I../../src/include 
> -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c 
> sysutils.c -o sysutils.o
> sysutils.c: In function 'R_system':
> sysutils.c:289: warning: implicit declaration of function 'WIFEXITED'
> sysutils.c:289: warning: implicit declaration of function 'WEXITSTATUS'
> gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
> -I../../src/extra/pcre  -I../../src/extra   -I. -I../../src/include 
> -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c 
> unique.c -o unique.o
> gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
> -I../../src/extra/pcre  -I../../src/extra   -I. -I../../src/include 
> -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c 
> util.c -o util.o
> gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
> -I../../src/extra/pcre  -I../../src/extra   -I. -I../../src/include 
> -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c 
> version.c -o version.o
> gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
> -I../../src/extra/pcre  -I../../src/extra   -I. -I../../src/include 
> -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -g -O2 -c 
> vfonts.c -o vfonts.o
> gfortran   -g -O2 -c xxxpr.f -o xxxpr.o
> ar cr libR.a CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o 
> agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o 
> character.o coerce.o colors.o complex.o connections.o context.o cov.o 
> cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o 
> dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o 
> format.o fourier.o gevents.o gram.o gram-ex.o gramLatex.o gramRd.o 
> graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o 
> lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o 
> model.o names.o objects.o optim.o optimize.o options.o par.o paste.o 
> platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o 
> printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o 
> saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o 
> sprintf.o startup.o subassign.o subscript.o subset.o summary.o 
> sysutils.o unique.o util.o version.o vfonts.o xxxpr.o libs/*o
> ranlib libR.a
> gcc -std=gnu99 -export-dynamic -L/usr/local/lib -o R.bin Rmain.o libR.a 
> -L../../lib -lRblas 
> -L/usr/local/lib/gcc44/gcc/x86_64-portbld-freebsd9.0/4.4.5 
> -L/usr/local/x86_64-portbld-freebsd9.0/lib -L/usr/local/lib/gcc44 
> -lgfortran -lm  /usr/local/lib/libintl.so /usr/local/lib/libiconv.so 
> -Wl,-rpath -Wl,/usr/local/lib -lreadline -llzma -lm -liconv -licuuc 
> -licui18n
> libR.a(sysutils.o)(.text+0x1d5d): In function `R_system':
> /usr/local/R-beta/src/main/sysutils.c:289: undefined reference to 
> `WIFEXITED'
> libR.a(sysutils.o)(.text+0x1d76):/usr/local/R-beta/src/main/sysutils.c:289: 
> undefined reference to `WEXITSTATUS'
> libR.a(sys-unix.o)(.text+0x475): In function `do_system':
> /usr/local/R-beta/src/unix/sys-unix.c:290: undefined reference to 
> `WIFEXITED'
> libR.a(sys-unix.o)(.text+0x551):/usr/local/R-beta/src/unix/sys-unix.c:290: 
> undefined reference to `WEXITSTATUS'
> *** Error code 1
> Stop in /usr/local/R-beta/src/main.
> *** Error code 1
> Stop in /usr/local/R-beta/src/main.
> *** Error code 1
> Stop in /usr/local/R-beta/src.
> *** Error code 1
> Stop in /usr/local/R-beta.
> -----------------------------------------
> 
> Is this a known error? I would really appreciate if someone could give 
> me a hint.
> 
> Please let me know if more information is needed.
> 
> Thanks in advance,
> Rainer Hurling
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel


-- 
Peter Dalgaard
Center for Statistics, Copenhagen Business School
Phone: (+45)38153501
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com