[Rd] Rd output garbled in some circumstances
Ross Boylan
ross at biostat.ucsf.edu
Thu Jan 14 00:15:36 CET 2010
I'm having trouble getting correct help output in some circumstances for
a package I've created. Though this is not an issue with the current R,
I would like my package to work with previous ones as well.
I'm looking for suggestions about how I could rework my .Rd file so that
it will work with prior R's. In particular, R 2.7 is in the latest
stable release of Debian, so I'd like to solve the problem for 2.7.
The .Rd file is for a function and has an arguments section like this
\arguments{
\item{formula}{ A formula giving the vectors containing
## skipped
covariates. }
## skipped
\item{stepdenominator}{See \code{stepnumerator} just above.}
\item{do.what}{\describe{
\item{1}{By default, calculates a maximimum likelihood. To evaluate
a single likelihood, set all parameters to fixed. }
\item{0}{Count number of paths and related statistics without
evaluating the likelihood.}
\item{-1}{Get detailed counts (but no likelihoods) associated with
each case. The return value is a matrix.}
\item{10}{Use the model to generate a random path for each
case. returning a \code{data.frame} with simulated observed states
and times and all other data as observed.}
}}
\item{testing}{This argument is only for use by developers. Set it
## etc
This comes out fine in a pdf, but ?mspath (the function) produces, in
part,
<quote>
stepdenominator: See 'stepnumerator' just above.
1 By default, calculates a maximimum likelihood. To evaluate a
single likelihood, set all parameters to fixed.
0 Count number of paths and related statistics without evaluating
the likelihood.
</quote>
in R 2.7. The "do.what" header has vanished. In R 2.10 it's fine.
Is there an error in my documentation format?
Even if not, is there some change I could make that would get R 2.7 to
work better?
The R change log doesn't show anything obviously related to this, though
it has several references to unspecified fixes to the documentation
system. I also tried looking at the bug tracker, but couldn't find
anything--in fact I had trouble identifying bugs in the documentation
system as opposed to bugs in the documentation.
Thanks.
Ross Boylan
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