[Rd] Rcmd check fails on Windows Samba network path in R 2.9.1
Kevin R. Coombes
krcoombes at mdacc.tmc.edu
Tue Jul 21 13:55:06 CEST 2009
Hi,
The problem almost certainly has something to do with Samba. We also
have a NetApp file system, and copying the package source to that drive
and running Rcmd check from Windows works just fine.
When running the commands from an interactive R session, file_test
returns TRUE and file.access to test write permission indicates a
failure, even though that information is incorrect.Here is a session
transcript:
-----------------------------------------
> getwd()
[1] "n:/krc/Umpire/R-Package"
> lib <- "Umpire.Rcheck"
> file_test("-d", lib)
[1] TRUE
> file.access(lib, 2)
Umpire.Rcheck
-1
> dir.create(paste(lib, "testdir", sep='/'))
> dir(lib)
[1] "00check.log" "00install.out" "testdir"
> sessionInfo()
R version 2.9.1 (2009-06-26)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
----------------------------------------
Again, this all worked (and still works) correctly in 2.8.1.
Kevin
Tony Plate wrote:
> This error message looks like it comes from
> src/library/tools/R/install.R, which contains the following test:
>
> if (!.file_test("-d", lib) || file.access(lib, 2L))
> stop("ERROR: no permission to install to directory ",
> sQuote(lib), call. = FALSE)
>
> The function .file_test() is defined earlier in the same file (it
> looks at file.info(lib)$isdir) and appears to be intended to be the
> same as utils:::file_test().
>
> You could start trying to figure out what the problem is by trying
> these calls on the directory in question from an interactive R session.
> (They seem to work as intended on my Windows system with a NetApp file
> system mounted on a letter drive.)
>
> -- Tony Plate
>
> Kevin R. Coombes wrote:
>> Hi,
>>
>> I have just updated R from version 2.8.1 to version 2.9.1. I am
>> running Windows XP Professional, Service Pack 3.
>>
>> With the update, I decided to update a set of packages that I
>> maintain by compiling them for the new version. Everything worked
>> fine except for one package. This package is unique (among the six I
>> was working on) in that is stored on a UNIX-based file server that is
>> exported to the Windows network via Samba. The root of that network
>> path is mapped to drive "N:" on the local machine.
>>
>> 'Rcmd check' fails for this package under 2.9.1. The error message
>> in '00install.out' is:
>> "Error: ERROR: no permission to install to directory
>> 'N:/krc/Umpire/R-Package/Umpire.Rcheck'"
>>
>> 'Rcmd check' works for this package under 2.8.1.
>>
>> 'Rcmd check' works for this package if the directory is copied onto a
>> local hard drive instead of the network drive.
>>
>> 'Rcmd build' and 'Rcmd build --binary' work under both versions.
>>
>> It would be nice if someone could figure out what has changed and fix
>> it....
>>
>> Best,
>> Kevin Coombes
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
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