[Rd] as.data.frame requires a lot of memory (PR#14140)
rfalke at tzi.de
rfalke at tzi.de
Mon Dec 14 18:45:15 CET 2009
Full_Name: Raimar Falke
Version: R version 2.10.0 (2009-10-26)
OS: Linux 2.6.27-16-generic #1 SMP Tue Dec 1 19:26:23 UTC 2009 x86_64 GNU/Linux
Submission from: (NULL) (134.102.222.56)
The construction of a data frame in the way shown below requires
much more memory than expected. If we assume a cell value takes 8 bytes
the total amount of the data is 128mb. However the process takes about
920mb and not the expected 256mb (two times the data set).
With the real data sets (~35000 observations with ~33000 attributes) the
conversion to a data frame requires has to be killed at with 60gb of
memory usage while it should only require 17.6gb (2*8.8gb).
dfn <- rep(list(rep(0, 4096)), 4096)
test <- as.data.frame.list(dfn)
I also tried the incremental construction of the
data-frame: df$colN <- dataForColN. While I currently can't say much
about the memory usage, it takes a looong time.
After the construction the saved-and-loaded data-frame has the expected size.
What is the recommended way to construct larger data-frames?
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