[Rd] describe function in package Hmisc and function format.dates in chron (PR#13087)
Charles Dupont
charles.dupont at Vanderbilt.Edu
Tue Sep 30 15:03:32 CEST 2008
This is because format.dates has become non-callable from outside the chron
package. Until the next release of Hmisc you can download a fixed version of
the describe function at
http://biostat.mc.vanderbilt.edu/svn/R/Hmisc/trunk/R/describe.s
Charles
kemphillips at comcast.net wrote:
> Full_Name: Kem Phillips
> Version: 2.7.1 (2008-06-23)
> OS: Windows Xp professional
> Submission from: (NULL) (98.221.200.108)
>
>
> The Hmisc function describe fails, giving the error message:
>
> Error in formatDateTime(dd, atx, !timeUsed) :
> could not find function "format.dates"
>
> Loading the chron package, where function dates apparently resides, does not
> fix the problem. Note also that loading chron gives a warning. Earlier
> versions of chron from the archive failed to load properly. Please see the
> entire session below, with the error message at the bottom.
>
> Thanks.
>
>
> R version 2.7.1 (2008-06-23)
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> ISBN 3-900051-07-0
>
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> [Previously saved workspace restored]
>
>> library(Hdisc)
> Error in library(Hdisc) : there is no package called 'Hdisc'
>> library(Hmisc)
>
> Attaching package: 'Hmisc'
>
>
> The following object(s) are masked from package:base :
>
> format.pval,
> round.POSIXt,
> trunc.POSIXt,
> units
>
> Warning message:
> package 'Hmisc' was built under R version 2.7.2
>> library(Design)
> Loading required package: survival
> Loading required package: splines
>
> Attaching package: 'survival'
>
>
> The following object(s) are masked from package:Hmisc :
>
> untangle.specials
>
> Design library by Frank E Harrell Jr
>
> Type library(help='Design'), ?Overview, or ?Design.Overview')
> to see overall documentation.
>
>
> Attaching package: 'Design'
>
>
> The following object(s) are masked from package:survival :
>
> Surv,
> survfit
>
>
> The following object(s) are masked from package:Hmisc :
>
> .R.,
> .SV4.
>
> Warning message:
> package 'Design' was built under R version 2.7.2
>> prostate NOTE THAT DATA SET prostate exists
> patno stage rx dtime status age wt
> pf hx sbp dbp ekg hg sz
> 1 1 3 0.2 mg estrogen 72 alive 75 76
> normal activity 0 15 9 heart strain 13.798828 2
>
> …..
>
> 505 13 8.39843750 0 3311
> 506 NA 22.19921880 1 3428
>> describe(prostate)
> Error in formatDateTime(dd, atx, !timeUsed) :
> could not find function "format.dates"
>> library(chron)
> Warning message:
> package 'chron' was built under R version 2.7.2
>> describe(prostate)
> Error in formatDateTime(dd, atx, !timeUsed) :
> could not find function "format.dates"
>
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>
--
Charles Dupont Computer System Analyst School of Medicine
Department of Biostatistics Vanderbilt University
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