[Rd] Defining an alias for a generic function and callNextMethod() strange behaviour

Herve Pages hpages at fhcrc.org
Tue Sep 9 19:57:24 CEST 2008


Hi,

My package contains the following foo() generic and methods (simplified
version):

   setGeneric("foo", signature="x", function(x, y=NA) standardGeneric("foo"))
   setMethod("foo", "ANY", function(x, y=NA) list(x, y))
   setMethod("foo", "character", function(x, y=NA) unlist(callNextMethod()))

   > foo(5)
   [[1]]
   [1] 5

   [[2]]
   [1] NA

   > foo("a")
   [1] "a" NA

And I want to define a temporary alias for foo() for backward
compatibility with some existing code:

   oldfoo <- function(...) { .Deprecated("foo"); foo(...) }

   > oldfoo(5)
   [[1]]
   [1] 5

   [[2]]
   [1] NA

   Warning message:
   'oldfoo' is deprecated.
   Use 'foo' instead.
   See help("Deprecated")

   > oldfoo("a")
   Error in .nextMethod() : argument "x" is missing, with no default
   In addition: Warning message:
   'oldfoo' is deprecated.
   Use 'foo' instead.
   See help("Deprecated")

Why isn't this working?

One way to make this work is to specify the arguments in the call
to callNextMethod(), or in the definition of the oldfoo alias.
But wouldn't that be nice to be able to just use
fooalias <- function(...) foo(...) for aliasing?

Thanks!
H.


R version 2.7.0 (2008-04-22)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_CA.UTF-8;LC_NUMERIC=C;LC_TIME=en_CA.UTF-8;LC_COLLATE=en_CA.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_CA.UTF-8;LC_PAPER=en_CA.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base



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