[Rd] Mac crash with installing packages (PR#10764)
Albert Vernon Smith
albert at hjarta.is
Fri Feb 15 17:45:51 CET 2008
My original description was not full enough. I only get the crash
when I'm installing from source. If I install precompiled binaries,
I seem to be fine. Also, if I install via the command
'install.packages(type="source")', I don't get a crash. It is
specific to the "Package Installer" menu option with "source" installs.
I still think this could be something specific to me, though I saw it
immediately upon upgrading to 2.6.2. The crash is completely silent
w.r.t. what appears in R. If I choose the "report" option of what
should be sent to Apple, I get the report below.
-albert
=======
Date/Time: 2008-02-15 16:28:25.523 +0000
OS Version: 10.4.11 (Build 8S2167)
Report Version: 4
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Parent: WindowServer [378]
Version: R 2.6.2 GUI 1.23 (4932) (4932)
PID: 10466
Thread: 2
Exception: EXC_BREAKPOINT (0x0006)
Code[0]: 0x00000002
Code[1]: 0x00000000
Thread 0:
0 libSystem.B.dylib 0x90037b57 mach_wait_until + 7
1 org.R-project.R 0x000060dd -[RController
handleSystemCommand:] + 602
2 org.R-project.R 0x0000d1cb Re_system + 86
3 libR.dylib 0x00457366 R_system + 82
4 libR.dylib 0x004b0066 do_system + 656
5 libR.dylib 0x003ba55c do_internal + 336
6 libR.dylib 0x0038518e Rf_eval + 1182
7 libR.dylib 0x00385f3f do_begin + 58
8 libR.dylib 0x0038518e Rf_eval + 1182
9 libR.dylib 0x003874a4 Rf_applyClosure + 663
10 libR.dylib 0x00385085 Rf_eval + 917
11 libR.dylib 0x00389576 do_set + 592
12 libR.dylib 0x0038518e Rf_eval + 1182
13 libR.dylib 0x00385f3f do_begin + 58
14 libR.dylib 0x0038518e Rf_eval + 1182
15 libR.dylib 0x00388deb do_for + 585
16 libR.dylib 0x0038518e Rf_eval + 1182
17 libR.dylib 0x00385f3f do_begin + 58
18 libR.dylib 0x0038518e Rf_eval + 1182
19 libR.dylib 0x0038518e Rf_eval + 1182
20 libR.dylib 0x00385f3f do_begin + 58
21 libR.dylib 0x0038518e Rf_eval + 1182
22 libR.dylib 0x003874a4 Rf_applyClosure + 663
23 libR.dylib 0x00385085 Rf_eval + 917
24 libR.dylib 0x0034657a protectedEval + 44
25 libR.dylib 0x00346beb R_ToplevelExec + 234
26 libR.dylib 0x00346c2a R_tryEval + 56
27 org.R-project.R 0x0000f624 -[REngine
evaluateExpressions:] + 168
28 org.R-project.R 0x0000fa08 -[REngine executeString:] +
202
29 org.R-project.R 0x00013a09 -[PackageInstaller
installSelected:] + 2978
30 com.apple.AppKit 0x93383dbc -[NSApplication
sendAction:to:from:] + 107
31 com.apple.AppKit 0x93383d15 -[NSControl sendAction:to:]
+ 101
32 com.apple.AppKit 0x93385ec1 -[NSCell _sendActionFrom:] +
168
33 com.apple.AppKit 0x933986a1 -[NSCell
trackMouse:inRect:ofView:untilMouseUp:] + 1271
34 com.apple.AppKit 0x933b6289 -[NSButtonCell
trackMouse:inRect:ofView:untilMouseUp:] + 848
35 com.apple.AppKit 0x933b5b39 -[NSControl mouseDown:] + 757
36 com.apple.AppKit 0x933733e3 -[NSWindow sendEvent:] + 5279
37 com.apple.AppKit 0x93365384 -[NSApplication sendEvent:]
+ 5023
38 org.R-project.R 0x00007ff2 -[RController
doProcessEvents:] + 517
39 org.R-project.R 0x00005680 -[RController
handleReadConsole:] + 76
40 org.R-project.R 0x0000cd2d Re_ReadConsole + 86
41 org.R-project.R 0x00016362 run_REngineRmainloop + 271
42 org.R-project.R 0x0000f336 -[REngine runREPL] + 406
43 org.R-project.R 0x00002795 main + 1135
44 org.R-project.R 0x0000230a _start + 216
45 org.R-project.R 0x00002231 start + 41
Thread 1:
0 libSystem.B.dylib 0x90009cd7 mach_msg_trap + 7
1 com.apple.CoreFoundation 0x9082d23b CFRunLoopRunSpecific + 2014
2 com.apple.CoreFoundation 0x9082ca56 CFRunLoopRunInMode + 61
3 com.apple.Foundation 0x92854bca +[NSURLCache
_diskCacheSyncLoop:] + 206
4 com.apple.Foundation 0x927f82c0 forkThreadForFunction + 123
5 libSystem.B.dylib 0x90024227 _pthread_body + 84
Thread 2 Crashed:
0 com.apple.Foundation 0x9282b45f _NSRaiseError + 227
1 com.apple.Foundation 0x9284747d -[NSConnection
sendInvocation:] + 1378
2 com.apple.Foundation 0x927fe448 -[NSObject
(NSForwardInvocation) forward::] + 469
3 libobjc.A.dylib 0x90a5ccc1 _objc_msgForward + 49
4 org.R-project.R 0x0000483d -[RController readThread:] +
1508
5 com.apple.Foundation 0x927f82c0 forkThreadForFunction + 123
6 libSystem.B.dylib 0x90024227 _pthread_body + 84
Thread 3:
0 libSystem.B.dylib 0x9003f6cf syscall_thread_switch + 7
1 com.apple.AppKit 0x9336d6a2 -[NSUIHeartBeat
_heartBeatThread:] + 1399
2 com.apple.Foundation 0x927f82c0 forkThreadForFunction + 123
3 libSystem.B.dylib 0x90024227 _pthread_body + 84
Thread 2 crashed with X86 Thread State (32-bit):
eax: 0x010fc000 ebx: 0x9282b38a ecx: 0x90a66b30 edx: 0x011e2920
edi: 0x0d2633f0 esi: 0x0d263500 ebp: 0xb019f968 esp: 0xb019f900
ss: 0x0000001f efl: 0x00000246 eip: 0x9282b45f cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
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Model: MacBookPro2,2, BootROM MBP22.00A5.B07, 2 processors, Intel
Core 2 Duo, 2.16 GHz, 2 GB
Graphics: ATI Radeon X1600, ATY,RadeonX1600, PCIe, 128 MB
Memory Module: BANK 0/DIMM0, 1 GB, DDR2 SDRAM, 667 MHz
Memory Module: BANK 1/DIMM1, 1 GB, DDR2 SDRAM, 667 MHz
AirPort: AirPort Extreme, 1.2.2
Bluetooth: Version 1.9.5f4, 2 service, 0 devices, 1 incoming serial
ports
Network Service: Built-in Ethernet, Ethernet, en0
Serial ATA Device: FUJITSU MHW2120BH, 111.79 GB
Parallel ATA Device: HL-DT-ST DVDRW GWA4080MA
USB Device: Built-in iSight, Micron, Up to 480 Mb/sec, 500 mA
USB Device: Hub, Up to 480 Mb/sec, 500 mA
USB Device: Hub in Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/
sec, 500 mA
USB Device: Apple Optical USB Mouse, Primax Electronics, Up to 1.5 Mb/
sec, 100 mA
USB Device: CP2102 USB to UART Bridge Controller, Silicon Labs, Up to
12 Mb/sec, 100 mA
USB Device: Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/sec,
250 mA
USB Device: Apple Cinema HD Display, Apple Computer, Inc., Up to 12
Mb/sec, 500 mA
USB Device: Apple Internal Keyboard / Trackpad, Apple Computer, Up to
12 Mb/sec, 500 mA
USB Device: IR Receiver, Apple Computer, Inc., Up to 12 Mb/sec, 500 mA
USB Device: Bluetooth USB Host Controller, Apple, Inc., Up to 12 Mb/
sec, 500 mA
FireWire Device: unknown_device, unknown_value, Unknown
=========
On Feb 15, 2008, at 4:20 PM, Simon Urbanek wrote:
>
> On Feb 15, 2008, at 10:05 AM, albert at hjarta.is wrote:
>
>> Full_Name: Albert Vernon Smith
>> Version: R 2.6.2
>> OS: MacOSX 10.4.11
>> Submission from: (NULL) (143.48.31.42)
>>
>>
>> Whenever I install a package in R 2.6.2 via the "R Package
>> Installer" functionality (Mac OS X 10.4.11), R crashes after the
>> installation. When I restart, the installed package seems to be
>> installed fine, just the annoying crash with each install.
>>
>
> I cannot reproduce the problem. When you see a crash, please send
> us the full crash information.
>
> Thanks,
> Simon
>
>
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