[Rd] rc note, etc

[Paul Gilbert]

Are the messages below to be expected from make check-all ?

using the rc today, Aug 21, on
Red Hat Enterprise Linux AS release 4 (Nahant Update 4)
Kernel 2.6.9-42.0.8.ELsmp on an x86_64

Paul
________
....
checking package 'utils'
....
* checking R code for possible problems ... NOTE
install.packages: no visible global function definition for
   ‘.install.winbinary’
install.packages: no visible global function definition for
   ‘.install.macbinary’

....
checking package 'stats'
....
* checking R code for possible problems ... NOTE
glm.fit: no visible binding for global variable ‘n’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking tests ...
make[3]: Entering directory 
`/home/mfa/gilp/toolchain/R/src/R-rc/tests/stats.Rcheck/tests'
   Running 'nafns.R'
   Running 'nls.R'
   Comparing 'nls.Rout' to 'nls.Rout.save' ...134c134
< Achieved convergence tolerance: 2.75e-06
---
 > Achieved convergence tolerance: 2.74e-06
145c145
<   3: 0.00060639084: 0.00517051 0.999153
---
 >   3: 0.00060639084: 0.00517052 0.999153
214c214
< Achieved convergence tolerance: 1.04e-07
---
 > Achieved convergence tolerance: 1.34e-07
249c249
< Achieved convergence tolerance: 1.73e-07
---
 > Achieved convergence tolerance: 1.29e-07
288c288
< Achieved convergence tolerance: 3.73e-08
---
 > Achieved convergence tolerance: 8.48e-09
382c382
< Achieved convergence tolerance: 2.80e-07
---
 > Achieved convergence tolerance: 2.81e-07
430c430
< Achieved convergence tolerance: 3.16e-06
---
 > Achieved convergence tolerance: 3.43e-06
487c487
< 11  3.40458   22.42470    1.38476
---
 > 11  3.40458   22.42471    1.38476
497,498c497,498
< 7  3.89865   23.13401    1.79455
< 8  4.52605  166.09148    2.20381
---
 > 7  3.89865   23.13399    1.79455
 > 8  4.52605  166.09149    2.20381
611c611
< Achieved convergence tolerance: 7.17e-07
---
 > Achieved convergence tolerance: 7.45e-07
647c647
< Achieved convergence tolerance: 2.08e-06
---
 > Achieved convergence tolerance: 1.98e-06
  OK

....
checking package 'methods'
....
* checking R code for possible problems ... NOTE
browseAll: no visible binding for global variable ‘.BrowserStack’
..dataPartReplace2: no visible binding for global variable ‘THISCLASS’
...First.lib: no visible binding for global variable ‘.possibleExtends’
...First.lib: no visible binding for global variable ‘.makeGeneric’
...First.lib: no visible binding for global variable
   ‘.newClassRepresentation’
...First.lib: no visible binding for global variable
   ‘..mergeClassDefSlots’
..makeBasicFuns: no visible global function definition for
   ‘.addBasicGeneric’
..makeBasicFuns: no visible binding for global variable
   ‘.addBasicGeneric’
..oldTestFun: no visible binding for global variable ‘CLASS’
selectMethod: no visible binding for global variable ‘.SelectMethodOn’
....
checking package 'grid'
....
* checking R code for possible problems ... NOTE
wrap.down: no visible binding for global variable ‘path’
wrap.pop: no visible binding for global variable ‘n’
wrap.up: no visible binding for global variable ‘n’
wrap.viewport: no visible binding for global variable ‘vp’
....
checking bundle 'VR'
....
** checking R code for possible problems ... NOTE
glmmPQL: no visible binding for global variable ‘wts’
negative.binomial : variance: no visible binding for global variable
   ‘.Theta’
negative.binomial : dev.resids: no visible binding for global variable
   ‘.Theta’
negative.binomial : aic: no visible binding for global variable
   ‘.Theta’
neg.bin : variance: no visible binding for global variable ‘.Theta’
neg.bin : dev.resids: no visible binding for global variable ‘.Theta’
neg.bin : aic: no visible binding for global variable ‘.Theta’
** checking Rd files ... OK

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