[Rd] Problems building package under Windows (PR#9303)
Duncan Murdoch
murdoch at stats.uwo.ca
Thu Oct 19 04:00:37 CEST 2006
On 10/18/2006 1:11 PM, agner at agner.org wrote:
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> Dear R people
>
> I want to contribute a new package (various noncentral hypergeometric
> distribution functions) using C++, but there are many errors when I try
> to build even a simple package.
You haven't followed the instructions for setting up to build a package.
These are in the R Installation and Administration Manual, referenced
from Windows FAQ entry 4.1, and the README file in the R home directory.
I suppose we could put in more pointers to these instructions, but
where? The FAQ seems the natural place to look when you first have
problems.
Because you didn't read these instructions, you've wasted a lot of time
solving problems that you shouldn't have had. That's sad, but it's
really your own fault. Reporting it as a bug in R wastes other people's
time; that's not very polite at all.
Duncan Murdoch
>
> Here are the most important errors I have encountered so far:
>
> 1.
> Trying to build the DLL, it can't find some of the include files. I had
> to make the following change in Makefile
> and copy some .h files:
> ---------------------------------------------------------------------------------------------------------------
>
> CFLAGS = $(OPTFLAGS) -I../include -I. -DHAVE_CONFIG_H -DR_DLL_BUILD
> replace by:
> CFLAGS = $(OPTFLAGS) -I../include -I../../include -I. -DHAVE_CONFIG_H
> -DR_DLL_BUILD
>
> 2.
> Filename case sensitivity.
> ---------------------------------------------------------------------------------------------------------------
> For some reasons, the perl scripts "build" and "check" are lower case,
> but "INSTALL" is uppercase. So I have to write
> R CMD build
> but
> R CMD INSTALL
>
> You may consider making Rcmd.exe case insensitive.
>
> 3.
> Problem with tar in BUILD and INSTALL scripts:
> ---------------------------------------------------------------------------------------------------------------
> This doesn't work:
>
> # workaround for paths in Cygwin tar
> $pkg =~ s+^([A-Za-x]):+/cygdrive/\1+;
>
> It works when I change it to:
>
> $pkg =~ s+^([A-Za-x]):+/\1+;
>
> This should be fixed everywhere you call tar
>
> 4.
> Trying to execute zip in INSTALL script:
> ---------------------------------------------------------------------------------------------------------------
>
> system("zip -r9Xq $startdir/$filename.zip $pkgname");
>
> There is no zip in Mingw, or I haven't found it. I had to change this to
> make a .tar.gz file instead. Remember the workaround mentioned in point
> 3 above.
>
> 5.
> Cannot install archive
> ---------------------------------------------------------------------------------------------------------------
> After the fixes above, I finally got an archive that looks OK, but it
> will not install. Trying:
>
> R CMD INSTALL Test1_1.0.tar.gz
>
> I get the following response:
>
> ---------- Making package Test1 ------------
> adding build stamp to DESCRIPTION
> Warning message:
> *** someone has corrupted the Built field in package 'test1' ***
> no R files in this package
> no man files in this package
> installing indices
> Error in Rdinfo(RdFiles[i]) : missing/empty \name field in
> 'c:/PROGRA~1/R/R-24~1
> .0/R7CFE~1.INS/Test1/man/Test1.Rd.gz'
> Rd files must have a non-empty \name.
> See chapter 'Writing R documentation' in manual 'Writing R Extensions'.
> Execution halted
> make[2]: *** [indices] Error 1
> make[1]: *** [all] Error 2
> make: *** [pkg-Test1] Error 2
> *** Installation of Test1 failed ***
> Removing 'C:/PROGRA~1/R/R-24~1.0/library/Test1'
>
> The first three messages don't make sense to me:
> - Nobody has corrupted the built field, at least I haven't touched it
> - There ARE R files in the package
> - There ARE man files in the package
>
> The fourth error indicates that it doesn't recognize that the Test1.Rd
> file is compressed. I didn't compress it, the scripts did!
>
> I am including the file Test1_1.0.tar.gz for your inspection.
>
> ---------------------------------------------------------------------------------------------------------------
>
> This is as far as I have come after several days of work. I still don't
> have even the simplest example working.
>
> Could you please tell me how to get around the problems I haven't solved
> yet.
>
> ---------------------------------------------------------------------------------------------------------------
>
> The poor documentation makes things worse. Allow me to propose some
> improvements in the manual "Writing R Extensions":
>
> * The manual doesn't tell clearly which directory to run R CMD ...
> from. This is important.
>
> * The manual doesn't tell clearly what software I need to install. I
> figured out that I needed Mingw, but it would be helpful
> to tell which packages of Mingw to install.
>
> * It is not clear that you have to install Perl
>
> * It doesn't tell that I need to install MS HTML Help Workshop.
>
> There seems to be a problem calling MS HELP (hcc.exe) unless the path
> is specified as DOS filenames without spaces.
>
> * It would be useful if you told where to get Mingw, Perl and MS Help
> from. Maybe I am using wrong versions?
>
> * The manual needs to tell whether to use _cdecl or _stdcall calling
> convention for C/C++ code under Windows32.
>
> * A full working example of a package with a small C/C++ code would be
> very helpful. The package should contain all
> necessary source files and the commands to build and install it.
>
> ---------------------------------------------------------------------------------------------------------------
>
> And one more thing:
> I had severe problems making Mingw work on my computer. The error
> "Couldn't reserve space for cygwin's heap" came up all the time. It
> appeared to be a problem with DLL's having conflicting base addresses.
>
> Not your fault, but when I tried to avoid the problem by compiling the
> DLL with a different compiler it turned out that I needed the file
> R.lib. To make R.lib I needed R.exp. To make R.exp I needed to rebuild R
> from its source, using the Mingw that didn't work! When I finally got
> Mingw to work and fixed the problems mentioned above, I got more and
> more errors from make, and when I finally got an R.exp file, it was empty!
>
> May I suggest that you provide the files R.exp and R.lib with the binary
> source for Windows, or make them available for download. This would make
> it much easier to use a different compiler. For example, the Intel C++
> compiler has a lot of advanced optimization options and big math
> function libraries that one might want to use.
>
> ---------------------------------------------------------------------------------------------------------------
> For your ref. I have R version 2.4.0, and the following Mingw modules:
> mingw-runtime-3.10.tar.gz, w32api-3.7.tar.gz,
> binutils-2.16.91-20060119-1.tar.gz, gcc-core-3.4.5-20060117-1.tar.gz,
> mingw32-make-3.80.0-3.tar.gz,
> msys-1.0.dll-SNAP-1.0.11-2006.04.23.tar.bz2,
> Windows 2000
>
>
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> --------------090108060506030400070300--
>
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