[Rd] Missing values for S4 slots [One Solution]
Ross Boylan
ross at biostat.ucsf.edu
Fri Nov 24 22:18:55 CET 2006
On Fri, Nov 24, 2006 at 11:23:14AM -0800, Ross Boylan wrote:
> Using R 2.4, the following fails:
> setClass("testc", representation(a="ANY"))
> makeC <- function(myarg) new("testc", a=myarg)
> makeC()
> -> Error in initialize(value, ...) : argument "myarg" is missing,
> with no default
....
>
> I suspect there's something I could do to get the constructor
> arguments, modify the list (i.e., delete args that were missing and
> insert new ones), and do.call(new, myArgList). Not only am I unsure
> how to do that (or if it would work), I'm hoping there's a better way.
I didn't find a way to get all the arguments easily(*), but manually
constructing the list works. Here are fragments of the code:
mspathCoefficients <- function(
aMatrix,
params,
offset=0,
baseConstrVec,
covLabels # other args omitted
) {
# innerArgs are used with do.call("new, innerArgs)
innerArgs <- list(
Class = "mspathCoefficients",
aMatrix = aMatrix,
baseConstrVec = as.integer(baseConstrVec),
params = params
)
# the next block inserts the covLabels argument
# only if it is non-missing
if (missing(covLabels)) {
# ....
} else {
innerArgs$covLabels <- covLabels
}
#...
map <- list()
# fill in the map
# add it to the arguments
innerArgs$map <- map
do.call("new", innerArgs)
}
This calls new("mspathCoefficients", ...) with just the non-missing
arguments. The constructed object has appropriately "missing" values
in the slots (e.g., character(0) given a slot of type "character").
(*) Inside the function, arg <- list(...) will capture the unnamed
arguments, but I don't have any. as.list(sys.frame(sys.nframe()) is
closer to what I was looking for, though all the values are promises.
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