[Rd] R 2.3.0 (alpha) on FreeBSD 6.1 fails make check-all

[Andrew Robinson]

Hi Developers,

The alpha, compiles successfully, but it is failing make check-all (on
two seperate machines, both FreeBSD 6.1).

Here is the version string:

platform       i386-unknown-freebsd6.1
arch           i386
os             freebsd6.1
system         i386, freebsd6.1
status         alpha
major          2
minor          3.0
year           2006
month          03
day            27
svn rev        37584
language       R
version.string Version 2.3.0 alpha (2006-03-27 r37584)



Here is the error message from make check-all

comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save'
...706c706
< [1] "Mean scaled  difference: 0.08333333"
---
> [1] TRUE
gmake[3]: *** [d-p-q-r-tests.Rout] Error 1
gmake[3]: Leaving directory `/usr/local/beta/R-alpha/tests'
gmake[2]: *** [test-Specific] Error 2
gmake[2]: Leaving directory `/usr/local/beta/R-alpha/tests'
gmake[1]: *** [test-all-basics] Error 1
gmake[1]: Leaving directory `/usr/local/beta/R-alpha/tests'
gmake: *** [check-all] Error 2




I have checked d-p-q-r-tests.Rout.fail for any obvious problems - I
found some warnings, viz.



> pgamma(1,Inf,scale=Inf) == 0
[1] TRUE
> ## Also pgamma(Inf,Inf) == 1 for which NaN was slightly more
appropriate
> all(is.nan(c(pgamma(Inf,  1,scale=Inf),
+              pgamma(Inf,Inf,scale=Inf))))
[1] TRUE
Warning messages:
1: NaNs produced in: pgamma(q, shape, scale, lower.tail, log.p) 
2: NaNs produced in: pgamma(q, shape, scale, lower.tail, log.p) 




> x0 <- -2 * 10^-c(22,10,7,5)
> stopifnot(pbinom(x0, size = 3, prob = 0.1) == 0,
+           dbinom(x0, 3, 0.1) == 0) # d*() warns about non-integer
Warning messages:
1: non-integer x = -0.000000
2: non-integer x = -0.000020
> ## very small negatives were rounded to 0 in R 2.2.1 and earlier
>


I hope that this is helpful.  Thanks are due to Peter Dalgaard for
guidance.  So, thanks Peter :).

Cheers

Andrew
-- 
Andrew Robinson  
Department of Mathematics and Statistics            Tel: +61-3-8344-9763
University of Melbourne, VIC 3010 Australia         Fax: +61-3-8344-4599
Email: a.robinson at ms.unimelb.edu.au         http://www.ms.unimelb.edu.au