[Rd] Error - Compiling R on a Sun V40Z - R/R-2.2.1 (PR#9024)

[denny at crosstab.com]

configure: WARNING: dlfcn.h: present but cannot be compiled
configure: WARNING: dlfcn.h:     check for missing prerequisite headers?
configure: WARNING: dlfcn.h: see the Autoconf documentation
configure: WARNING: dlfcn.h:     section "Present But Cannot Be Compiled"
configure: WARNING: dlfcn.h: proceeding with the preprocessor's result
configure: WARNING: dlfcn.h: in the future, the compiler will take 
precedence
configure: WARNING:     ## ----------------------------------- ##
configure: WARNING:     ## Report this to r-bugs at R-project.org ##
configure: WARNING:     ## ----------------------------------- ##
checking for dlfcn.h... yes
-------------------------------------------------------------------------------------------------------------------------- 

LANG=C
LD_LIBRARY_PATH=/usr/sfw/lib:/usr/lib:/usr/local/lib:/usr/local/BerkeleyDB.4.4/lib
LIVE_BIN_DIR=/dbdev/bin/:/dbdev/3.0.0/
LIVE_DIR=/dbdev
LOGNAME=denny
MAIL=/var/mail//denny
MANPATH=/usr/sfw/man:/opt/sfw/pgsql/man::/usr/share/man:/usr/local/man
NAMS_LOGINS=/dbdev/logins
OPT_BIN_DIR=/usr/local/bin:/usr/sfw/bin
OPT_MAN_DIR=/usr/sfw/man:/opt/sfw/pgsql/man
PATH=/usr/ccs/bin:.:/dbdev/bin/:/dbdev/3.0.0/:/usr/local/bin:/usr/sfw/bin:/usr/bin:/opt/sfw/bin:/opt/sfw/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/pgsql/bin

--------------------------------------------------------------------------------------------------------------------------
$ cat ./z
./configure --with-readline=no --without-recommended-packages
$ . ./z
checking build system type... i386-pc-solaris2.10
checking host system type... i386-pc-solaris2.10
loading site script './config.site'
loading build specific script './config.site'
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for working makeinfo... found
checking for gawk... no
checking for mawk... no
checking for nawk... nawk
checking for egrep... egrep
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... tools/install-sh -c
checking for sed... /usr/xpg4/bin/sed
checking for less... /usr/bin/less
checking for perl... /usr/local/bin/perl
checking whether perl version is at least 5.004... yes
checking for dvips... no
checking for tex... no
checking for latex... no
configure: WARNING: you cannot build DVI versions of the R manuals
checking for makeindex... no
checking for pdftex... no
checking for pdflatex... no
configure: WARNING: you cannot build PDF versions of the R manuals
checking for makeinfo... /usr/sfw/bin/makeinfo
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /dbdev/bin//gzip
checking for firefox... no
checking for mozilla... /usr/sfw/bin/mozilla
using default browser ... /usr/sfw/bin/mozilla
checking for acroread... no
checking for acroread4... no
checking for xpdf... no
checking for gv... no
checking for gnome-gv... no
checking for ggv... /usr/bin/ggv
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files...
checking whether we are using the GNU C compiler... no
checking whether gcc accepts -g... no
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking how to run the C preprocessor... gcc -E
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for gfortran... no
checking for ftn... no
checking for g95... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for g77... g77
checking whether we are using the GNU Fortran 77 compiler... no
checking whether g77 accepts -g... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking how to run the C++ preprocessor... g++ -E
checking for a sed that does not truncate output... /usr/bin/sed
checking for non-GNU ld... /usr/ccs/bin/ld
checking if the linker (/usr/ccs/bin/ld) is GNU ld... no
checking for /usr/ccs/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/ccs/bin/nm -p
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... no
checking for sys/types.h... no
checking for sys/stat.h... no
checking for stdlib.h... no
checking for string.h... no
checking for memory.h... no
checking for strings.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... no
checking dlfcn.h usability... no
checking dlfcn.h presence... yes
configure: WARNING: dlfcn.h: present but cannot be compiled
configure: WARNING: dlfcn.h:     check for missing prerequisite headers?
configure: WARNING: dlfcn.h: see the Autoconf documentation
configure: WARNING: dlfcn.h:     section "Present But Cannot Be Compiled"
configure: WARNING: dlfcn.h: proceeding with the preprocessor's result
configure: WARNING: dlfcn.h: in the future, the compiler will take 
precedence
configure: WARNING:     ## ----------------------------------- ##
configure: WARNING:     ## Report this to r-bugs at R-project.org ##
configure: WARNING:     ## ----------------------------------- ##
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 262144
checking command to parse /usr/ccs/bin/nm -p output from gcc object... 
failed
checking for objdir... .libs
checking for ranlib... (cached) ranlib
checking for strip... strip
checking if gcc static flag  works... yes
checking for gcc option to produce PIC... -KPIC
checking if gcc PIC flag -KPIC works... no
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/ccs/bin/ld) supports shared 
libraries... yes
checking dynamic linker characteristics... solaris2.10 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking whether the g++ linker (/usr/ccs/bin/ld) supports shared 
libraries... yes
checking for g++ option to produce PIC...
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/ccs/bin/ld) supports shared 
libraries... yes
checking dynamic linker characteristics... solaris2.10 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... no
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for g77 option to produce PIC... -KPIC
checking if g77 PIC flag -KPIC works... no
checking if g77 supports -c -o file.o... yes
checking whether the g77 linker (/usr/ccs/bin/ld) supports shared 
libraries... yes
checking dynamic linker characteristics... solaris2.10 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... no
checking whether makeinfo version is at least 4.7... yes
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for ANSI C header files... (cached) no
checking whether time.h and sys/time.h may both be included... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... yes
checking floatingpoint.h presence... yes
checking for floatingpoint.h... yes
checking fpu_control.h usability... no
checking fpu_control.h presence... no
checking for fpu_control.h... no
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking ieee754.h usability... no
checking ieee754.h presence... no
checking for ieee754.h... no
checking ieeefp.h usability... yes
checking ieeefp.h presence... yes
checking for ieeefp.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for strings.h... (cached) no
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) no
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) no
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for string.h... (cached) no
checking whether setjmp.h is POSIX.1 compatible... yes
checking for GNU C library with version >= 2... no
checking return type of signal handlers... void
checking for pid_t... no
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... no
checking for type of socket length... socklen_t *
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking for long double... yes
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using gcc -M
checking whether gcc supports -c -o FILE.lo... yes
checking how to get verbose linking output from g77... -v
checking for Fortran libraries of g77...  -L/usr/ccs/lib -L/usr/lib 
-L/usr/local/lib 
-L/dska/local/bin/../lib/gcc-lib/i386-pc-solaris2.10/3.3.6 
-L/dska/local/bin/../lib/gcc-lib 
-L/usr/local/lib/gcc-lib/i386-pc-solaris2.10/3.3.6 -L/usr/ccs/bin 
-L/dska/local/bin/../lib/gcc-lib/i386-pc-solaris2.10/3.3.6/../../.. 
-L/usr/local/lib/gcc-lib/i386-pc-solaris2.10/3.3.6/../../.. -lfrtbegin 
-lg2c -lm -lgcc_s
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/ccs/lib -L/usr/lib 
-L/usr/local/lib 
-L/dska/local/bin/../lib/gcc-lib/i386-pc-solaris2.10/3.3.6 
-L/dska/local/bin/../lib/gcc-lib 
-L/usr/local/lib/gcc-lib/i386-pc-solaris2.10/3.3.6 -L/usr/ccs/bin 
-L/dska/local/bin/../lib/gcc-lib/i386-pc-solaris2.10/3.3.6/../../.. 
-L/usr/local/lib/gcc-lib/i386-pc-solaris2.10/3.3.6/../../.. -lgcc_eh
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, 
extra underscore
checking whether g77 appends underscores to external names... yes
checking whether mixed C/Fortran code can be run... yes
checking whether g77 and gcc agree on int and double... yes
checking whether g77 and gcc agree on double complex... yes
checking whether g77 supports -c -o FILE.lo... yes
checking whether g++ accepts -M for generating dependencies... yes
checking whether g++ supports -c -o FILE.lo... yes
checking whether C runtime needs -D__NO_MATH_INLINES... yes
checking for xmkmf... /usr/openwin/bin/xmkmf
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking for access... yes
checking for chdir... yes
checking for expm1... yes
checking for fcntl... yes
checking for finite... yes
checking for fseeko... yes
checking for ftello... yes
checking for ftruncate... yes
checking for getcwd... yes
checking for getgrgid... yes
checking for getpwuid... yes
checking for getuid... yes
checking for hypot... yes
checking for isascii... yes
checking for log1p... yes
checking for matherr... yes
checking for mkdtemp... no
checking for mkfifo... yes
checking for popen... yes
checking for putenv... yes
checking for realpath... yes
checking for rint... yes
checking for setenv... yes
checking for strcoll... yes
checking for stat... yes
checking for strerror... yes
checking for strptime... yes
checking for symlink... yes
checking for system... yes
checking for times... yes
checking for unsetenv... yes
checking whether isfinite is declared... no
checking whether isnan is declared... yes
checking for finite... (cached) yes
checking for isnan... yes
checking whether isfinite is declared... (cached) no
checking whether isnan is declared... (cached) yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking for nl_langinfo and CODESET... yes
checking for acosh... yes
checking for asinh... yes
checking for atanh... yes
checking for snprintf... yes
checking for strdup... yes
checking for strncasecmp... yes
checking for vsnprintf... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether snprintf is declared... yes
checking whether strdup is declared... no
checking whether strncasecmp is declared... no
checking whether vsnprintf is declared... yes
checking for library containing connect... -lsocket
checking for library containing gethostbyname... -lnsl
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working finite... yes
checking for working log... no
checking for working log1p... yes
checking for working strptime... yes
checking whether ftell works correctly on files opened for append... yes
checking whether C99 double complex is supported...
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking for cexp... yes
checking for clog... yes
checking for csqrt... yes
checking for cpow... yes
checking for ccos... yes
checking for csin... yes
checking for ctan... yes
checking for cacos... yes
checking for casin... yes
checking for catan... yes
checking for ccosh... yes
checking for csinh... yes
checking for ctanh... yes
checking for cacosh... yes
checking for casinh... yes
checking for catanh... yes
checking whether C99 double complex is compatible with Rcomplex... no
no
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... no
checking for dgemm_ in -lsunperf... no
checking for dgemm_ in -lblas... (cached) no
checking for dgemm_ in -lblas... (cached) no
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking for mbrtowc... yes
checking for mbstowcs... yes
checking for wcrtomb... yes
checking for wcscoll... yes
checking for wcsftime... yes
checking for wcstombs... yes
checking for wcswidth... yes
checking for wctrans... yes
checking for wcwidth... yes
checking whether wcwidth is declared... yes
checking whether wcswidth is declared... yes
checking for wctrans_t... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv() accepts "UTF-8" and "latin1"... no
checking for iconvlist... no
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
using X11 ... yes
checking for KeySym... yes
checking for CFStringGetSystemEncoding in CoreFoundation framework... no
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... 
/usr/local/lib/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... no
checking /usr/local/include/tcl8.3/generic/tcl.h usability... no
checking /usr/local/include/tcl8.3/generic/tcl.h presence... no
checking for /usr/local/include/tcl8.3/generic/tcl.h... no
checking /usr/local/include/tcl8.3/tcl.h usability... no
checking /usr/local/include/tcl8.3/tcl.h presence... no
checking for /usr/local/include/tcl8.3/tcl.h... no
checking /usr/local/include/tcl.h usability... yes
checking /usr/local/include/tcl.h presence... yes
checking for /usr/local/include/tcl.h... yes
checking for tk.h... no
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.0.5... yes
checking for png_create_write_struct in -lpng... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking whether bzip2 support needs to be compiled... yes
checking whether PCRE support needs to be compiled... yes
checking whether leap seconds are treated according to POSIX... yes
checking for setitimer... yes
checking for lpr... no
checking for lp... lp
checking for paperconf... false
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking whether Java interpreter works... yes
checking for Java environment... in /usr/jdk/instances/jdk1.5.0/jre
checking whether NLS is requested... yes
checking whether make sets $(MAKE)... yes
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking for strerror in -lcposix... no
checking for signed... yes
checking for inline... inline
checking for off_t... (cached) yes
checking for long long... (cached) yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking for stdlib.h... (cached) no
checking for unistd.h... (cached) no
checking for getpagesize... yes
checking for working mmap... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking whether integer division by zero raises SIGFPE... yes
checking for unsigned long long... yes
checking for inttypes.h... yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for stdint.h... (cached) no
checking for SIZE_MAX... yes
checking for stdint.h... (cached) no
checking for non-GNU ld... /usr/ccs/bin/ld
checking if the linker (/usr/ccs/bin/ld) is GNU ld... no
checking for shared library run path origin... done
checking for ptrdiff_t... no
checking argz.h usability... no
checking argz.h presence... no
checking for argz.h... no
checking for limits.h... (cached) yes
checking for locale.h... (cached) yes
checking nl_types.h usability... yes
checking nl_types.h presence... yes
checking for nl_types.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) no
checking for string.h... (cached) no
checking for unistd.h... (cached) no
checking for sys/param.h... (cached) yes
checking for asprintf... no
checking for fwprintf... yes
checking for getcwd... (cached) yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... (cached) yes
checking for mempcpy... no
checking for munmap... yes
checking for putenv... (cached) yes
checking for setenv... (cached) yes
checking for setlocale... yes
checking for snprintf... (cached) yes
checking for stpcpy... no
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
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checking for wcslen... yes
checking for __argz_count... no
checking for __argz_stringify... no
checking for __argz_next... no
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checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether feof_unlocked is declared... no
checking whether fgets_unlocked is declared... no
checking whether getc_unlocked is declared... no
checking for iconv... yes
checking for iconv declaration...
         extern size_t iconv (iconv_t cd, const char * *inbuf, size_t 
*inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for bison... bison
checking version of bison... 1.875, ok
checking whether included gettext is requested... no
checking for GNU gettext in libc... no
checking for GNU gettext in libintl... no
checking whether to use NLS... yes
checking where the gettext function comes from... included intl directory
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
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config.status: creating doc/html/Makefile
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config.status: creating tests/Native/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands

R is now configured for i386-pc-solaris2.10

  Source directory:          .
  Installation directory:    /usr/local

  C compiler:                gcc -D__NO_MATH_INLINES
  C++ compiler:              g++ 
  Fortran compiler:          g77 

  Interfaces supported:      X11
  External libraries:       
  Additional capabilities:   PNG, JPEG, MBCS, NLS
  Options enabled:           R profiling

  Recommended packages:      no

configure: WARNING: you cannot build DVI versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
$
$ make
creating src/scripts/R.fe
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
Rmath.h is unchanged
`libbz2.a' is up to date.
`libpcre.a' is up to date.
`libz.a' is up to date.
../../../src/include/libintl.h is unchanged
../../../include/libintl.h is unchanged
`localecharset.h' is up to date.
`libintl.a' is up to date.
`libappl.a' is up to date.
`libnmath.a' is up to date.
`libunix.a' is up to date.
gcc -I../../src/extra/zlib -I../../src/extra/bzip2 
-I../../src/extra/pcre   -I. -I../../src/include -I../../src/include 
-I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES   -c 
connections.c -o connections.o
connections.c: In function `fifo_open':
connections.c:626: error: storage size of `sb' isn't known
connections.c:649: error: `S_IFIFO' undeclared (first use in this function)
connections.c:649: error: (Each undeclared identifier is reported only once
connections.c:649: error: for each function it appears in.)
*** Error code 1
make: Fatal error: Command failed for target `connections.o'
Current working directory /dska/dbdev/home/denny/R/R-2.2.1/src/main
*** Error code 1
The following command caused the error:
make install-bin-local
make: Fatal error: Command failed for target `R'
Current working directory /dska/dbdev/home/denny/R/R-2.2.1/src/main
*** Error code 1
The following command caused the error:
for d in scripts include extra appl nmath unix main modules library; do \
  (cd ${d} && make R) || exit 1; \
done
make: Fatal error: Command failed for target `R'
Current working directory /dska/dbdev/home/denny/R/R-2.2.1/src
*** Error code 1
The following command caused the error:
for d in m4 tools doc etc share src tests  po; do \
  (cd ${d} && make R) || exit 1; \
done
make: Fatal error: Command failed for target `R'
$