[Rd] configure on mac

Mon Aug 14 18:36:40 CEST 2006

My prior message now seems a bit premature.  R seemed fine and, for
example, installed my package SparseM without complaint, but  now
trying to install  quantreg or Matrix, I'm getting:

gcc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined  
dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -L/ 
usr/local/lib -o quantreg.so akj.o boot.o bound.o boundc.o chlfct.o  
cholesky.o dsel05.o extract.o kuantile.o mcmb.o penalty.o qrcens.o  
rls.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o sparskit2.o srqfn.o  
srqfnc.o srtpai.o xlapack.o -L/Library/Frameworks/R.framework/ 
Resources/lib -lRblas -L/usr/local/lib/gcc/powerpc-apple- 
darwin8/4.0.0 -L/usr/local/lib/gcc -lgfortran -lgcc_s -lSystemStubs - 
lmx -lSystem -F/Library/Frameworks/R.framework/.. -framework R
ld: multiple definitions of symbol __gfortran_filename
/Library/Frameworks/R.framework/Resources/lib/libRblas.dylib(single  
module) definition of __gfortran_filename
/usr/local/lib/libgfortran.a(error.o) definition of  
__gfortran_filename in section (__DATA,__data)
ld: multiple definitions of symbol __gfortran_line
/Library/Frameworks/R.framework/Resources/lib/libRblas.dylib(single  
module) definition of __gfortran_line
.
.
.
/usr/bin/libtool: internal link edit command failed
make: *** [quantreg.so] Error 1
ERROR: compilation failed for package 'quantreg'

Any further suggestions would be very welcome.

Roger

url:    www.econ.uiuc.edu/~roger            Roger Koenker
email    rkoenker at uiuc.edu            Department of Economics
vox:     217-333-4558                University of Illinois
fax:       217-244-6678                Champaign, IL 61820

On Aug 14, 2006, at 8:15 AM, roger koenker wrote:

> Yes,  upgrading to Xcode 2.4  worked perfectly.  Thanks to all.
>
> url:    www.econ.uiuc.edu/~roger            Roger Koenker
> email    rkoenker at uiuc.edu            Department of Economics
> vox:     217-333-4558                University of Illinois
> fax:       217-244-6678                Champaign, IL 61820
>
>
> On Aug 14, 2006, at 8:07 AM, stefano iacus wrote:
>
>> Hi Roger,
>> due to latest change in the build scripts, you need to get the  
>> latest apple dev tools to correctly build r-devel. In particular,  
>> libtool needs to be updated. This is contained in the latest apple  
>> dev (XCode 2.3 as other mentioned) on apple developer web site.
>> stefano
>>
>> On 12/ago/06, at 18:56, roger koenker wrote:
>>
>>> I'm having trouble making yesterday's R-devel on my macs.
>>>
>>> ./configure seems fine, but eventually in make I get:
>>>
>>> gcc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined
>>> dynamic_lookup -single_module -multiply_defined suppress -L/sw/ 
>>> lib -L/
>>> usr/local/lib -install_name libR.dylib -compatibility_version  
>>> 2.4.0  -
>>> current_version 2.4.0  -headerpad_max_install_names -o libR.dylib
>>> Rembedded.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o
>>> RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o
>>> builtin.o character.o coerce.o colors.o complex.o connections.o
>>> context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o
>>> dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o
>>> eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o
>>> identical.o internet.o iosupport.o lapack.o list.o localecharset.o
>>> logic.o main.o mapply.o match.o memory.o model.o names.o objects.o
>>> optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o
>>> plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o
>>> qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o
>>> scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o
>>> startup.o subassign.o subscript.o subset.o summary.o sysutils.o
>>> unique.o util.o version.o vfonts.o xxxpr.o   `ls ../appl/*.o ../ 
>>> nmath/
>>> *.o ../unix/*.o  2>/dev/null|grep -v /ext-` -framework vecLib -
>>> lgfortran -lgcc_s -lSystemStubs -lmx -lSystem  ../extra/zlib/
>>> libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a  -lintl -
>>> liconv -Wl,-framework -Wl,CoreFoundation -lreadline  -lm -liconv
>>> /usr/bin/libtool: unknown option character `m' in: - 
>>> macosx_version_min
>>> Usage: /usr/bin/libtool -static [-] file [...] [-filelist listfile
>>> [,dirname]] [-arch_only arch] [-sacLT]
>>> Usage: /usr/bin/libtool -dynamic [-] file [...] [-filelist listfile
>>> [,dirname]] [-arch_only arch] [-o output] [-install_name name] [-
>>> compatibility_version #] [-current_version #] [-seg1addr 0x#] [-
>>> segs_read_only_addr 0x#] [-segs_read_write_addr 0x#] [- 
>>> seg_addr_table
>>> <filename>] [-seg_addr_table_filename <file_system_path>] [- 
>>> all_load]
>>> [-noall_load]
>>> make[3]: *** [libR.dylib] Error 1
>>> make[2]: *** [R] Error 2
>>> make[1]: *** [R] Error 1
>>> make: *** [R] Error 1
>>>
>>> This was ok  as of my last build which was:
>>>
>>>> version
>>>                 _
>>> platform       powerpc-apple-darwin8.7.0
>>> arch           powerpc
>>> os             darwin8.7.0
>>> system         powerpc, darwin8.7.0
>>> status         Under development (unstable)
>>> major          2
>>> minor          4.0
>>> year           2006
>>> month          07
>>> day            28
>>> svn rev        38710
>>> language       R
>>> version.string R version 2.4.0 Under development (unstable)
>>> (2006-07-28 r38710)
>>>
>>> url:    www.econ.uiuc.edu/~roger                Roger Koenker
>>> email   rkoenker at uiuc.edu                       Department of  
>>> Economics
>>> vox:    217-333-4558                            University of  
>>> Illinois
>>> fax:    217-244-6678                            Champaign, IL 61820
>>>
>>> ______________________________________________
>>> R-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>