[Rd] Stack checking, core dumps, and embedding R
Prof Brian Ripley
ripley at stats.ox.ac.uk
Wed Apr 12 07:45:38 CEST 2006
On Tue, 11 Apr 2006, Jeffrey Horner wrote:
> Simon Urbanek wrote:
>> On Apr 11, 2006, at 5:34 AM, A.J. Rossini wrote:
>>
>>> I've been experiencing some interesting stack warnings recently
>>> when moving from R 2.2.x to the R 2.3.0 series and the R 2.4.0
>>> series. In particular, I'm getting warnings of "Error: C stack
>>> usage is too close to the limit" before segfaulting, and this
>>> wasn't happening under the 2.2.x series.
>>>
>>> Here's the question statement: (ONLY) In the situation where one
>>> is embedding R, is anyone else seeing this occur with recent (past
>>> 2 weeks) versions of R (both the 2.3.x and 2.4.x series)?
>>>
>>
>> When embedding R, the stack base is set to -1 (which is almost
>> certainly wrong) if R cannot find the stack base using some system
>> method. I have just fixed the detection for OS X, so you shouldn't
>
> My question may be unrelated, but I stumbled across it while trying to
> understand the above problem. The following is from R-trunk r37731
> src/unix/system.c in Rf_initialize_R() and is run when the os is neither
> linux nor freebsd:
>
> if(R_running_as_main_program) {
> /* This is not the main program, but unless embedded it is
> near the top, 5540 bytes away when checked. */
> R_CStackStart = (uintptr_t) &i + 6000;
> }
>
> This is run before we know which direction the stack grows:
>
> {
> int ii;
> /* 1 is downwards */
> R_CStackDir = ((uintptr_t)&i > (uintptr_t)&ii) ? 1 : -1;
> }
>
> So, R_CStackStart is being set to the address of i (on the stack) plus
> 6000 bytes, an approximation to somewhere near the beginning of the
> stack, but this presumes the stack grows down, right? What if it grows
> up? Then shouldn't we subtract 6000 bytes?
Probably, but is 12000 bytes important (stack sizes are around 10Mb)?
Do you know of an R platform on which it grows up, BTW (I don't)?
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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