[Rd] BIC doesn't work for glm(family=binomial()) (PR#8208)
Peter Dalgaard
p.dalgaard at biostat.ku.dk
Sun Oct 16 09:36:55 CEST 2005
jusung at andrew.cmu.edu writes:
> Full_Name: Ju-Sung Lee
> Version: 2.2.0
> OS: Windows XP
> Submission from: (NULL) (66.93.61.221)
>
>
> BIC() requires the attribute $nobs from the logLik object but the logLik of a
> glm(formula,family=binomial()) object does not include $nobs. Adding
> attr(obj,'nobs') = value, seems to allow BIC() to work.
>
> Reproducing the problem:
> library(nmle);
> BIC(logLik(glm(1~1,family=binomial())));
It is not clear to me that "nobs" is a well-defined concept for
arbitrary likelihood functions. In particular, binomial models are
tricky: Is "13 successes in 79 trials" one (binomial) observation or
79 (Bernoulli) ones??
So BIC may not be defined. In which sense is this a bug, anyway? The
BIC function is defined inside the nlme package which is not designed
to work with anything but continuous data.
--
O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
More information about the R-devel
mailing list