[Rd] Problem Sweaving vignettes: MiKTeX's texi2dvi reports errors

[Peter G. Warren]

Hi, Prof. Ripley,

Yes, indeed, that was my problem - thank you! I made the mistake of
installing in the default path of C:\Program Files\R. I just now reinstalled
in C:\R, and everything worked fine. However, if anyone else runs into this,
you cannot just go off and run texi2dvi on an existing .tex file after
installing in a non-space path: you should rerun the whole Sweave example,
which forces a number of additional required items to be downloaded. Let
that process complete, then rerun again. It works fine! The finished pdf
file sure looks sweet.

Thank you again!

Regards,
= Peter

-----Original Message-----
From: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk] 
Sent: Sunday, October 02, 2005 3:01 PM
To: Peter G. Warren
Cc: r-devel at r-project.org
Subject: Re: [Rd] Problem Sweaving vignettes: MiKTeX's texi2dvi reports
errors

I get

> texi2dvi("Sweave-test-1.tex", pdf=TRUE, quiet=FALSE)
This is pdfeTeX, Version 3.141592-1.20a-rc7.2-2.2 (MiKTeX 2.4) output format
initialized to PDF entering extended mode (Sweave-test-1.tex LaTeX2e
<2003/12/01> Babel <v3.8a> and hyphenation patterns for english, french,
german, ngerman, dumylang, nohyphenation, loaded.
(C:\packages\MikTeX\tex\latex\base\article.cls
Document Class: article 2004/02/16 v1.4f Standard LaTeX document class
(C:\packages\MikTeX\tex\latex\base\size10.clo))
(C:\packages\MikTeX\tex\latex\ltxmisc\a4wide.sty
(C:\packages\MikTeX\tex\latex\ntgclass\a4.sty))
(d:/R/svn/trunk/share/texmf/Sweave.sty

LaTeX Warning: You have requested package
`d:/R/svn/trunk/share/texmf/Sweave',
                but the package provides `Sweave'.

so my guess is that this a path problem with your MiKTeX and it is not
finding Sweave.sty.

Simple questions: where did you install R?  Is there a space in the path?


On Sun, 2 Oct 2005, Peter G. Warren wrote:

> Hi,
>
> I am trying to create a Bioconductor package. Everything installs and 
> checks fine. Now I'm on my last step, which is to create a vignette. 
> I'm trying to test the Sweave process, to make sure I can build a 
> vignette. I am stuck at the texi2dvi stage, which fails when I try to 
> process the example Sweave-test-1.tex file.
>
> I am using Windows binary R distributions, and have the same problem 
> on both the latest developer version (2.2.0 Beta) and the latest 
> patched version
> (2.1.1) . For the Tex processing, I first tried downloading and 
> installing fpTex, but found that it doesn't have texi2dvi. Some 
> Googling informed me that recent MiKTeX versions now have that 
> function, so I just downloaded that (the small installation). Indeed 
> there is a texi2dvi. The first time I ran it, it downloaded a class file
it needed, so now it at least executes.
> However, when I try to run it on the test Sweave tex file, I get an error.
> Here's the sequence in R:
>
>> library(tools)
>> example(Sweave)
> [...output suppressed]
>> texi2dvi("Sweave-test-1.tex", pdf=TRUE, quiet=FALSE)
> Error in texi2dvi("Sweave-test-1.tex", pdf=TRUE, quiet = FALSE) :
>        running texi2dvi on 'Sweave-test-1.tex' failed
>
> [A command window pops up, and the following is from that window: ]
>
> This is pdfeTeX, Version 3.141592-1.20a-rc7.2-2.2 (MiKTeX 2.4) output 
> format initialized to PDF entering extended mode (Sweave-test-1.tex 
> LaTeX2e <2003/12/01> Babel <v3.8a> and hyphenation patterns for 
> english, french, german, ngerman, du mylang, nohyphenation, loaded.
> (C:\MiKTex\texmf\tex\latex\base\article.cls
> Document Class: article 2004/02/16 v1.4f Standard LaTeX document class
> (C:\MiKTex\texmf\tex\latex\base\size10.clo))
> (C:\MiKTex\texmf\tex\latex\ltxmisc\a4wide.sty
> (C:\MiKTex\texmf\tex\latex\ntgclass\a4.sty))
> ! Missing \endcsname inserted.
> <to be read again>
>                   \protect
> l.11 \begin
>           {document}
> ?
>
> [ Here, I hit a <CR>, and get the following:]
>
> ! LaTeX Error: Missing \begin{document}.
>
> See the LaTeX manual or LaTeX Companion for explanation.
> Type  H <return>  for immedi ate help.
> ...
>
> l.11 \begin
>           {document}
> ?
>
> -----------------
> I have also tried running texi2dvi directly on the command line, and 
> get the same result. I've looked at the manual on the MiKTeX site, but 
> find nothing that tells me what may be wrong. The Sweave test file 
> looks fine to me. I have also tried running texify --pdf on the same 
> file on the command line, but get the same results exactly.
>
> I also went to the R-tools site, and went through their page on MiKTeX 
> issues. Using their second suggestion (since I'm using the recent 
> MiKTeX version, which defaults to e-TeX mode), I tried changing the 
> mode for texinfo from e-TeX Extended to e-TeX Compatibility mode: no 
> change in results. (I'm assuming that texi2dvi is part of texinfo 
> package - please correct me if I'm wrong.) [I also tried changing 
> texinfo from e-TeX to TeX mode, and rebuilt/reloade/refreshed, but 
> this did not seem to take: texi2dvi still reports that it's in e-TeX 
> mode.]
>
> Finally, I did try posting this to the bioc-devel list, and got some 
> good suggestions (which I've tried, results above). They then 
> suggested I move the question over here.
>
> Regards, and thanks,
> - Peter Warren
>
>
>
>
>
> 	[[alternative HTML version deleted]]
>
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>
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595