[Rd] vcov on result of rlm() yields "-- please report!" (PR#7707)
frank at trdlnk.com
frank at trdlnk.com
Fri Feb 25 23:04:29 CET 2005
This is a multi-part message in MIME format.
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Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Content-Transfer-Encoding: 7bit
Dear r-bugs,
I looked over the FAQ. Hope I'm reporting this correctly.
I ran this on both solaris and windows. I've provided terminal snapshots
which include how R was called from the command line, and the
result of version at the R prompt.
I have attached the .r file, and the data file and the output snapshots.
Below also find everything except only a few lines of the data file.
Note that it seems to work for lm() but not for rlm().
Not that it matters for our purposes, but the same program(except for
modifying read.csv()) runs without error under Splus Version 6.2.1on
Linux 2.4.18.
Thanks for looking at this.
Of course let me know if I can provide any other information.
Frank Hansen
312-264-2043
-------- here is a cut and paste from the terminal window on solaris ---
brahe:/home/titan/frank $ R
R : Copyright 2004, The R Foundation for Statistical Computing
Version 1.9.1 (2004-06-21), ISBN 3-900051-00-3
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
> version
_
platform i386-pc-solaris2.8
arch i386
os solaris2.8
system i386, solaris2.8
status
major 1
minor 9.1
year 2004
month 06
day 21
language R
> source("test.r")
[1] "before vcov( lm.out)"
[1] "before vcov(rlm.out)"
Error in if (rdf != z$df.residual) warning("inconsistent residual
degrees of fre
edom. -- please report!") :
missing value where TRUE/FALSE needed
>
---here is a cut and paste of the terminal window on dos -----
H:\Notes>R
R : Copyright 2004, The R Foundation for Statistical Computing
Version 2.0.1 (2004-11-15), ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 0.1
year 2004
month 11
day 15
language R
> source("test.r")
[1] "before vcov( lm.out)"
[1] "before vcov(rlm.out)"
Error in if (rdf != z$df.residual) warning("inconsistent residual
degrees of fre
edom. -- please report!") :
missing value where TRUE/FALSE needed
>
here is the program
----------------- test.r --------
library(MASS)
dat <- read.csv( "data.for.r.help.no.I.csv", header=TRUE)
attach( dat)
log1pX <- log(1 + X)
logZ <- log(Z)
rlm.out <- rlm( Y ~ -1+ Factor + log1pX + logZ + W, method="M")
lm.out <- lm( Y ~ -1+ Factor + log1pX + logZ + W)
print( "before vcov( lm.out)" )
vcov( lm.out)
print( "before vcov(rlm.out)" )
vcov( rlm.out)
print( "after vcov(rlm.out)" )
---------------
---------here is head on the data file --------
"Y","Factor","X","Z","W"
8.73469387755,"A",-0.050335552279,3.49,1.30413295097
23.5315946724,"B",0.399664852202,4.59,0.914640733428
854.100293301,"C",6.65305970571,2.12,-0.127812880306
27.1833605167,"D",0.101059456576,3.52,-0.0648127731788
17.7277970012,"D",0.0446397114047,4.59,-0.137983116953
15.9722222222,"C",0.000378382282472,4.59,-0.495730019986
26.2627737226,"E",0.138801178471,3.55,-0.220289949486
21.9134615385,"A",0.387109096009,3.55,1.22120113878
16.5000165,"C",0.133098708566,3.52,-0.243375187344
--------------020205020409020506080205
Content-Type: text/x-comma-separated-values;
name="data.for.r.help.no.I.csv"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
filename="data.for.r.help.no.I.csv"
"Y","Factor","X","Z","W"
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23.5315946724,"B",0.399664852202,4.59,0.914640733428
854.100293301,"C",6.65305970571,2.12,-0.127812880306
27.1833605167,"D",0.101059456576,3.52,-0.0648127731788
17.7277970012,"D",0.0446397114047,4.59,-0.137983116953
15.9722222222,"C",0.000378382282472,4.59,-0.495730019986
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21.9134615385,"A",0.387109096009,3.55,1.22120113878
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25.8745622811,"D",0.229205420669,2.12,-0.200177307421
16.4680232558,"E",0.179418817508,3.51,-0.335809927225
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8.27361563518,"E",0.0406370104999,3.55,0.0423073286075
18.7425860024,"E",0.100508655177,2.12,-0.291833520189
21.326754386,"A",-0.0666644294356,3.55,-0.377558236144
16.5308118683,"D",0.00488001447699,4.59,0.550971878424
19.7704081633,"B",0.295825553381,3.51,-0.507839519531
16.7927631579,"D",0.0412655840118,3.49,0.96097762139
58.32,"G",0.36793901326,2.12,-0.543313547312
18.2540983607,"F",0.130183791089,3.52,-0.254570872016
21.5294117647,"A",0.216310718816,3.63,-0.44837847382
32.6153846154,"B",0.616852170827,3.5,-0.137872313787
12.100456621,"F",-0.0716737993601,4.59,-0.217552654798
96.2121212121,"C",1.43708718338,3.49,-0.562412776152
44.3225806452,"F",0.455679605168,3.55,-0.0195847468614
35.1515151515,"H",0.0634403289952,3.49,-0.301121066447
18.9349112426,"B",0.419806161243,3.49,-0.481343868127
13.6689038031,"E",0.129475482986,3.69,0.173172092336
13.4612676056,"E",0.038580753911,3.51,0.209952518491
17.2413793103,"F",0.0818016458158,4.59,-0.532234060716
32.7247290378,"C",0.223591135664,3.59,-0.522165497386
32.8036322361,"D",0.159738245449,3.59,-0.469923672172
14.0371621622,"A",0.00786263593081,3.49,-0.522361789137
18.6205016358,"C",0.0697282036396,4.59,-0.559036392043
22.5321637427,"C",0.253176165958,3.49,-0.462649257589
12.8644939966,"A",-0.257191950463,3.69,-0.535866080593
15.3495440729,"E",0.0686445282036,4.59,-0.559465909933
20.5068356119,"E",0.195081088435,4.59,-0.425675859628
6.37312126076,"E",0.0533894440023,4.59,-0.480184792314
16.2802641233,"E",0.105766795295,4.59,-0.107738832602
31.4438502674,"H",0.296937975502,4.59,-0.0697960106888
16.4912917271,"E",0.161621584567,4.59,-0.405132454694
50.1695168467,"B",1.43722620782,2.12,-0.0963983153273
53.9838337182,"H",0.377434883805,4.59,-0.361241121249
19.0052356021,"C",0.114790302635,3.55,-0.509974244194
10.2944111776,"A",0.117306642214,2.12,0.390494449889
--------------020205020409020506080205
Content-Type: text/plain;
name="test.r"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
filename="test.r"
library(MASS)
dat <- read.csv( "data.for.r.help.no.I.csv", header=TRUE)
attach( dat)
log1pX <- log(1 + X)
logZ <- log(Z)
rlm.out <- rlm( Y ~ -1+ Factor + log1pX + logZ + W, method="M")
lm.out <- lm( Y ~ -1+ Factor + log1pX + logZ + W)
print( "before vcov( lm.out)" )
vcov( lm.out)
print( "before vcov(rlm.out)" )
vcov( rlm.out)
print( "after vcov(rlm.out)" )
--------------020205020409020506080205
Content-Type: text/plain;
name="test.unix.out"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
filename="test.unix.out"
brahe:/home/titan/frank $ R
R : Copyright 2004, The R Foundation for Statistical Computing
Version 1.9.1 (2004-06-21), ISBN 3-900051-00-3
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
> version
_
platform i386-pc-solaris2.8
arch i386
os solaris2.8
system i386, solaris2.8
status
major 1
minor 9.1
year 2004
month 06
day 21
language R
> source("test.r")
[1] "before vcov( lm.out)"
[1] "before vcov(rlm.out)"
Error in if (rdf != z$df.residual) warning("inconsistent residual degrees of freedom. -- please report!") :
missing value where TRUE/FALSE needed
>
--------------020205020409020506080205
Content-Type: text/plain;
name="test.dos.out"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
filename="test.dos.out"
H:\Notes>R
R : Copyright 2004, The R Foundation for Statistical Computing
Version 2.0.1 (2004-11-15), ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 0.1
year 2004
month 11
day 15
language R
> source("test.r")
[1] "before vcov( lm.out)"
[1] "before vcov(rlm.out)"
Error in if (rdf != z$df.residual) warning("inconsistent residual degrees of fre
edom. -- please report!") :
missing value where TRUE/FALSE needed
>
--------------020205020409020506080205--
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