[Rd] R-beta 2004-04-07 build failed on AIX
Liaw, Andy
andy_liaw at merck.com
Thu Apr 7 19:31:20 CEST 2005
I thought I'd give this another shot before the official release. I tried
building R-beta_2004-04-07 on the AIX system that I have access to, and it
seemed to failed at lazy-loading survival. I'd very much appreciate any
pointer on what to try or look for next.
1. I set OBJECT_MODE to 64 for building 64-bit binary.
2. I edited config.site with the following:
CC="xlc_r"
CFLAGS="-O -qmaxmem=-1 -qarch=auto -qtune=auto"
F77="xlf_r"
FFLAGS="-O -qmaxmem=-1 -qarch=auto -qtune=auto -qextname"
SHLIB_LDFLAGS="-Wl,-G -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry
-Wl,-bexpall"
CXX="xlC_r"
CXXFLAGS="-O -qmaxmem=-1 -qarch=auto -qtune=auto"
SHLIB_CXXLDFLAGS="-qmkshrobj"
3. Ran configure with the following options:
--with-tcltk=no --prefix=$HOME --with-readline=no
and get the following:
R is now configured for powerpc-ibm-aix5.1.0.0
Source directory: ../R-beta
Installation directory: /SFS/user/ry/liawand
C compiler: xlc_r -O -qmaxmem=-1 -qarch=auto -qtune=auto
C++ compiler: xlC_r -O -qmaxmem=-1 -qarch=auto -qtune=auto
Fortran compiler: xlf_r -O -qmaxmem=-1 -qarch=auto -qtune=auto
-qext
name
Interfaces supported: X11
External libraries:
Additional capabilities: MBCS, NLS
Options enabled: R profiling
Recommended packages: yes
4. Ran `gmake', which produced the following:
[...]
xlc_r -Wl,-G -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
-Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
-Wl,-bI:/SFS/user/ry/liawand/R/Rbuild/etc/R.exp -L/usr/local/lib -o
survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o
agmart2.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o
chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o cox_Rcallback.o
coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o coxscho.o coxscore.o
dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o
survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o
survreg3.o survreg4.o survreg5.o -lm
gmake[3]: Leaving directory `/ltmp/R.INSTALL.5603432/survival/src'
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
/SFS/user/ry/liawand/R/Rbuild/bin/INSTALL[325]: 5677292 Illegal
instruction(coredump)
ERROR: lazy loading failed for package 'survival'
gmake[2]: *** [survival.ts] Error 1
gmake[2]: Leaving directory
`/SFS/user/ry/liawand/R/Rbuild/src/library/Recommended'
gmake[1]: *** [recommended-packages] Error 2
gmake[1]: Leaving directory
`/SFS/user/ry/liawand/R/Rbuild/src/library/Recommended'
gmake: *** [stamp-recommended] Error 2
Best,
Andy
More information about the R-devel
mailing list