[Rd] problem compiling R-1.9.0beta with PGI compilers on
amd6 4
Liaw, Andy
andy_liaw at merck.com
Sat Apr 3 02:43:47 CEST 2004
> From: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk]
>
> On Fri, 2 Apr 2004, Liaw, Andy wrote:
>
> > Dear R-devel,
> >
> > I'm trying to compile R-1.9.0beta (2004-03-31) with the PGI
> compilers
> > (15-day free evaluation: after the 15 days the binaries
> will stop working).
> > I'm running into some problems, that I hope some can offer pointers.
> >
> > 1. After configure, the FLIBS include /usr/local/lib' ---
> note the extra '.
> > I had to manually delete it in a couple of places.
> >
> > In a previous thread on compiling R with ifc/icc, Saikat wrote:
> > ===
> > The problem is in the AC_F77_LIBRARY_LDFLAGS macro. It
> guesses the linker
> > flags by passing a verbose option (-v for ifc) to the
> compiler. For ifc this
> > produces a multiline output, one line continued to the next by a \
> > character. It also contains some " characters. These
> together produces the
> > wrong results. We can fix this by removing all \ and " from
> the variable
> > ac_f77_v_output in that macro. I am not sure if this breaks
> anything in
> > other compilers.
> > ===
> > Seems like this is related.
> >
> > 2. `make' ran fine, until I get:
> > make[3]: Leaving directory `/u1/scratch/R-1.9.0/src/library/ts'
> > installing parsed NAMESPACE files
> > make[2]: *** [R] Error 139
> > make[2]: Leaving directory `/u1/scratch/R-1.9.0/src/library'
> > make[1]: *** [R] Error 1
> > make[1]: Leaving directory `/u1/scratch/R-1.9.0/src'
> > make: *** [R] Error 1
> >
> > Does anyone know what might be causing this error?
> >
> > Also, if I then run `bin/R', I just get a segfault. Is
> this expected? (I
> > thought not, since it's at the package building stage...)
>
> 2. is trying to run R, so that is the cause. You need to
> find out why R
> segfaults.
>
> --
> Brian D. Ripley, ripley at stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
I have a bit of success. I can build R with pgf77/gcc/g++, and it passes
make check. Will keep trying with pgcc/pgCC, and maybe compare timing,
if/when I find the time.
Best,
Andy
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