[Rd] R 1.7.0 installation problem: make check fails when using
--with-lapack option
Matthias Burger
ml-it-r-devel at epigenomics.com
Wed Apr 23 13:32:58 MEST 2003
Hi,
just as a follow up:
as suggested by my sys admin I make use of the environment variable LD_PRELOAD
to tell the run time linker where to find the desired libraries.
export
LD_PRELOAD=/usr/lib/sse2/atlas/libblas.so.2:/usr/lib/sse2/atlas/liblapack.so.2
echo $LD_PRELOAD
/usr/lib/sse2/atlas/libblas.so.2:/usr/lib/sse2/atlas/liblapack.so.2
> system("ldd R.bin")
/usr/lib/sse2/atlas/libblas.so.2 => /usr/lib/sse2/atlas/libblas.so.2
(0x40016000)
/usr/lib/sse2/atlas/liblapack.so.2 =>
/usr/lib/sse2/atlas/liblapack.so.2 (0x403ec000)
libg2c.so.0 => /usr/lib/gcc-lib/i386-linux/3.2.2/../../../libg2c.so.0
(0x40919000)
libm.so.6 => /lib/libm.so.6 (0x40946000)
[...]
so this works now as expected.
But testing with the example provided by Ramón Díaz-Uriarte
I can confirm that I get the errors as well,
filed as bug report PR# 2823 already.
So for the time being I conlude that I will not enable ATLAS support.
I'b be very happy to hear of any news or development on resolving this problem.
Regards,
Matthias
--
Matthias Burger
Bioinformatics R&D
Epigenomics AG www.epigenomics.com
Kleine Pr?sidentenstra?e 1 fax: +49-30-24345-555
10178 Berlin Germany phone: +49-30-24345-0
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