Hello:

  I am using ess with R 2.4.1, and Xemacs 21.4. I am in a  state where
xEmacs displays a warning buffer with messages like:

 

 

(717) (warning/warning) Error caught in `font-lock-pre-idle-hook':
(error Nesting too deep for parser)

 

  I have seen this reported in various ess and R newsgroups and it seems
to have something to do with unbalanced parens in R warning messages. I
was wondering if this bug has been fixed in a release of ESS beyond
5.3.1 or if there were known workarounds. 

 

  Thanks.

 

Emacs  : XEmacs 21.4 (patch 19) "Constant Variable" [Lucid]
(i586-pc-win32) of Sat Jan 28 2006 on VSHELTON-PC2

Package: ess-mode 5.3.1

 

current state:

==============

(setq

 ess-language "S"

 ess-dialect "R"

 ess-ask-for-ess-directory nil

 ess-ask-about-transfile nil

 ess-directory nil

 ess-keep-dump-files "always"

 ess-source-directory "C:\\DOCUME~1\\jmarcus\\LOCALS~1\\Temp"

 )

[ess-site.el]: ess-customize-alist=nil 

[ess-site.el _2_]: ess-customize-alist=nil 

(R): ess-rterm-versions-create making M-x defuns for c:/Program
Files/R/R-2.4.1/bin/Rterm.exe

(R): ess-dialect=nil, buf=*scratch*, start-arg=nil

 current-prefix-arg=nil

(inferior-ess 0): ess-start-args=--ess   

ess-setq-vars-default 0: ess-language=Initial, -dialect=nil, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=*scratch*

(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 

(inferior-ess) Method #3 start=c:\users\jeff\R_Projects\Network\Optout\
buf=*R*

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 

(inf-ess 2.2): start args = --ess  , inf-ess-start-args=--ess   

(inf-ess finish [S(R), Rterm(nil,nil)]

(ess-multi 0):  inf-ess-start-args=--ess  , comint-..echoes=nil

(i-ess 1): buf=*R*, lang=S, comint..echo=nil,
comint..sender=comint-simple-send,

(i-ess 2): buf=*R*, lang=S, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(i-ess 3): curr-buf=*R*, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-multi post inf-ess: start-args=--ess  , comint-echoes=t

(ess-multi 1):  start-args=--ess   

Making Process...Buf *R*, Proc R, Prog Rterm

 Start File=nil, Args= --ess  .

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=dm.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=dm.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

(ess-setq-vars-LOCAL): language=S, dialect=S+6, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) ..--> (ess-get-modtime-list)

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-object-names obj=package:datasets): no directory - trying names

(ess-object-names obj=file:../.Functions): no directory - trying names

(ess-object-names obj=package:Rgraphviz): no directory - trying names

(ess-object-names obj=package:geneplotter): no directory - trying names

(ess-object-names obj=package:annotate): no directory - trying names

(ess-object-names obj=package:Biobase): no directory - trying names

(ess-object-names obj=package:tools): no directory - trying names

(ess-object-names obj=package:graph): no directory - trying names

(ess-object-names obj=package:rpart): no directory - trying names

(ess-object-names obj=package:stats): no directory - trying names

(ess-object-names obj=package:graphics): no directory - trying names

(ess-object-names obj=package:grDevices): no directory - trying names

(ess-object-names obj=package:RODBC): no directory - trying names

(ess-object-names obj=package:utils): no directory - trying names

(ess-object-names obj=package:methods): no directory - trying names

(ess-object-names obj=Autoloads): no directory - trying names

(ess-object-names obj=package:base): no directory - trying names

ess-get-modtime-list: new alist of length 18

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=S+6, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=accuracy.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=semantic.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

ess-BEG-of-fun after 'search-FWD (': Ini-pt 78410, (p)-Ini-pt = 20

ELSE  not in setMethod() header ...

            Match,Pt:(77714,77751),77714

ess-END-of-fun: S4=nil, beginning = 77714

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

 

(R): ess-dialect=R, buf=*R*, start-arg=nil

 current-prefix-arg=nil

(inferior-ess 0): ess-start-args=--ess   

ess-setq-vars-default 0: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=*R*

(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 

(inferior-ess) Method #1 start=c:\users\jeff\R_Projects\Network\Optout\
buf=*R*

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 

(inf-ess 2.2): start args = --ess  , inf-ess-start-args=--ess   

(inf-ess finish [S(R), Rterm(R,R)]

(ess-multi 0):  inf-ess-start-args=--ess  , comint-..echoes=t

(i-ess 1): buf=*R*, lang=S, comint..echo=nil,
comint..sender=comint-simple-send,

(i-ess 2): buf=*R*, lang=S, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(i-ess 3): curr-buf=*R*, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-multi post inf-ess: start-args=--ess  , comint-echoes=t

(ess-multi 1):  start-args=--ess   

Making Process...Buf *R*, Proc R, Prog Rterm

 Start File=nil, Args= --ess  .

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) ..--> (ess-get-modtime-list)

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-object-names obj=dm.stats.for.sf): no directory - trying names

(ess-object-names obj=dm.stats.for.sf): no directory - trying names

(ess-object-names obj=file:.bn.insight.rawt.by.dm): no directory -
trying names

(ess-object-names obj=package:datasets): no directory - trying names

(ess-object-names obj=file:../.Functions): no directory - trying names

(ess-object-names obj=package:Rgraphviz): no directory - trying names

(ess-object-names obj=package:geneplotter): no directory - trying names

(ess-object-names obj=package:annotate): no directory - trying names

(ess-object-names obj=package:Biobase): no directory - trying names

(ess-object-names obj=package:tools): no directory - trying names

(ess-object-names obj=package:graph): no directory - trying names

(ess-object-names obj=package:rpart): no directory - trying names

(ess-object-names obj=package:stats): no directory - trying names

(ess-object-names obj=package:graphics): no directory - trying names

(ess-object-names obj=package:grDevices): no directory - trying names

(ess-object-names obj=package:RODBC): no directory - trying names

(ess-object-names obj=package:utils): no directory - trying names

(ess-object-names obj=package:methods): no directory - trying names

(ess-object-names obj=Autoloads): no directory - trying names

(ess-object-names obj=package:base): no directory - trying names

ess-get-modtime-list: new alist of length 21

(ess-object-names obj=.GlobalEnv): no directory - trying names

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(get-object-list R) ..--> (ess-get-modtime-list)

ess-get-modtime-list: new alist of length 19

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=load_esa.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-mode-1): ess-language=S, ess-dialect=R buf=semantic.R 

(ess-mode-1.5): alist=((ess-local-customize-alist quote
R-customize-alist) (ess-dialect . R) (ess-suffix . R)
(ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix
ess-dump-filename-template-proto) (ess-mode-syntax-table .
R-syntax-table) (ess-mode-editing-alist . R-editing-alist)
(ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex .
ess-help-R-sec-regex) (ess-help-sec-keys-alist .
ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout)
(ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern .
ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el)
(ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave,
envir=baseenv())

) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value",
envir=baseenv()))

) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program .
inferior-R-program-name) (inferior-ess-objects-command .
inferior-R-objects-command) (inferior-ess-font-lock-keywords .
inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command .
search()

) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)

) (inferior-ess-help-filetype) (inferior-ess-exit-command . q())
(inferior-ess-exit-prompt . Save workspace image? [y/n/c]: )
(inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> )
(inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file)
(inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor)
(ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command .
q()

) (inferior-ess-language-start eval inferior-S-language-start)
(comint-use-prompt-regexp-instead-of-fields . t)) 

(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\|
page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter)
(paragraph-ignore-fill-prefix . t) (require-final-newline . t)
(comment-start . #) (comment-add . 1) (comment-start-skip . #+ *)
(comment-column . 40) (indent-line-function quote S-indent-line)
(parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style)
(ess-local-process-name) (ess-mode-syntax-table . S-syntax-table)
(add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 

]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil
nil ((?\. . w) (?_ . w))))) 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

 

Finished setting up ESS-mode.

ess-BEG-of-fun after 'search-FWD (': Ini-pt 2289, (p)-Ini-pt = 24

ELSE  not in setMethod() header ...

            Match,Pt:(53,86),53

ess-END-of-fun: S4=nil, beginning = 53

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-help-bogus-buffer-p *help[R](order)*) |--> nil [searching t]

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-help-bogus-buffer-p *help[R](write.csv)*) |--> nil [searching t]

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*,
comint..echoes=nil, comint..sender=comint-simple-send

 

(R): ess-dialect=R, buf=20080130.st, start-arg=nil

 current-prefix-arg=nil

(inferior-ess 0): ess-start-args=--ess   

ess-setq-vars-default 0: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=20080130.st

(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 

(inferior-ess) Method #1 start=c:/users/jeff/R_Projects/Network/Optout/
buf=20080130.st

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(inf-ess 2.1): ess-language=S, ess-dialect=R buf=20080130.st 

(inf-ess 2.2): start args = --ess  , inf-ess-start-args=--ess   

(inf-ess finish [S(R), Rterm(R,R)]

(ess-multi 0):  inf-ess-start-args=--ess  , comint-..echoes=t

(i-ess 1): buf=20080130.st, lang=S, comint..echo=nil,
comint..sender=comint-simple-send,

(i-ess 2): buf=20080130.st, lang=S, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(i-ess 3): curr-buf=20080130.st, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-multi post inf-ess: start-args=--ess  , comint-echoes=t

(ess-multi 1):  start-args=--ess   

Making Process...Buf 20080130.st, Proc R, Prog Rterm

 Start File=nil, Args= --ess  .

 

(R): ess-dialect=R, buf=20080130.st, start-arg=nil

 current-prefix-arg=nil

(inferior-ess 0): ess-start-args=--ess   

ess-setq-vars-default 0: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil,
comint..echoes=nil, comint..sender=comint-simple-send

(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=20080130.st

(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 

(inferior-ess) Method #1 start=c:/users/jeff/R_Projects/Network/Optout/
buf=20080130.st

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(inf-ess 2.1): ess-language=S, ess-dialect=R buf=20080130.st 

(inf-ess 2.2): start args = --ess  , inf-ess-start-args=--ess   

(inf-ess finish [S(R), Rterm(R,R)]

(ess-multi 0):  inf-ess-start-args=--ess  , comint-..echoes=t

(i-ess 1): buf=20080130.st, lang=S, comint..echo=nil,
comint..sender=comint-simple-send,

(i-ess 2): buf=20080130.st, lang=S, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t,
comint..sender=inferior-R-input-sender

(i-ess 3): curr-buf=20080130.st, comint..echo=t,
comint..sender=inferior-R-input-sender,

(ess-multi post inf-ess: start-args=--ess  , comint-echoes=t

(ess-multi 1):  start-args=--ess   

Making Process...Buf 20080130.st, Proc R, Prog Rterm

 Start File=nil, Args= --ess  .

(get-object-list R) ..--> (ess-get-modtime-list)

(ess-object-names obj=.GlobalEnv): no directory - trying names

(ess-object-names obj=package:datasets): no directory - trying names

(ess-object-names obj=file:../.Functions): no directory - trying names

(ess-object-names obj=package:Rgraphviz): no directory - trying names

(ess-object-names obj=package:geneplotter): no directory - trying names

(ess-object-names obj=package:annotate): no directory - trying names

(ess-object-names obj=package:Biobase): no directory - trying names

(ess-object-names obj=package:tools): no directory - trying names

(ess-object-names obj=package:graph): no directory - trying names

(ess-object-names obj=package:rpart): no directory - trying names

(ess-object-names obj=package:stats): no directory - trying names

(ess-object-names obj=package:graphics): no directory - trying names

(ess-object-names obj=package:grDevices): no directory - trying names

(ess-object-names obj=package:RODBC): no directory - trying names

(ess-object-names obj=package:utils): no directory - trying names

(ess-object-names obj=package:methods): no directory - trying names

(ess-object-names obj=Autoloads): no directory - trying names

(ess-object-names obj=package:base): no directory - trying names

ess-get-modtime-list: new alist of length 18

(ess-object-names obj=.GlobalEnv): no directory - trying names

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names

(get-object-list R) .. using existing ess-*-alist

(ess-object-names obj=.GlobalEnv): no directory - trying names


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