[ESS-bugs] ess-mode 5.3.7; ess-transcript-send-command-and-move

Wed Mar 12 03:41:09 CET 2008

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Hi,

I sent this to the mailing list a while back, and forgot about it
shortly after. It's still a minor problem:

When I'm working with the R transcript, I can resend previous commands
using <return>, and I can paste previous commands to the current input
prompt for editing with C-c <return>. However, M-<return> does the
same thing as unmodified <return>. i.e., it takes the command around
point and enters it on the current input prompt, and leaves the cursor
at the newest prompt at the bottom of the buffer, rather than stepping
through to the subsequent prompt in the transcript. 

I checked to make sure that it is in fact bound to
ess-transcript-send-command-and-move. I also checked the function
itself, evaluating each argument individually using M-: 

  (ess-transcript-send-command)
  (goto-char ess-temp-point)
  (comint-next-prompt 1)

This works, passing the command around point to the interpreter and
moving the cursor to the next prompt! But when called as a function it
leaves the cursor at the bottom of the transcript. Further
experimenting revealed that redefining the function to include an
additional line between ess-transcript-send-command and goto-char
fixes the problem, but I have no idea why. For example, this works:

(defun my-test2 ()
  "Send the command on this line, and move point to the next command."
  (interactive)
  (ess-transcript-send-command)
  (read-from-minibuffer 
    (format "ess-temp-point: %s. point: %s" ess-temp-point (point)))
  (goto-char ess-temp-point)
  (comint-next-prompt 1))

Can anyone confirm that this happens for them too, or offer me any
suggestions on how to fix it?

Thanks!

Tyler

[ess-site.el]: ess-customize-alist=nil 
[ess-site.el _2_]: ess-customize-alist=nil 
(S): ess-s-versions-create making M-x defuns for 

(R): ess-r-versions-create making M-x defuns for 

(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=alvar.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=spatial.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.

(R): ess-dialect=R, buf=spatial.R, start-arg=nil
 current-prefix-arg=nil
(inferior-ess 0): ess-start-args=--no-readline "--no-restore"  
ess-setq-vars-default 0: ess-language=Initial, -dialect=nil, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=spatial.R
(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 
(inferior-ess) Method #3 start=/home/tyler/rworkingdirectory/ buf=*R*
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 
(inf-ess 2.2): start args = --no-readline "--no-restore" , inf-ess-start-args=--no-readline "--no-restore"  
(inf-ess finish [S(R), R(nil,nil)]
(ess-multi 0):  inf-ess-start-args=--no-readline "--no-restore" , comint-..echoes=nil
(i-ess 1): buf=*R*, lang=S, comint..echo=nil, comint..sender=comint-simple-send,
(i-ess 2): buf=*R*, lang=S, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t, comint..sender=inferior-R-input-sender
(i-ess 3): curr-buf=*R*, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-multi post inf-ess: start-args=--no-readline "--no-restore" , comint-echoes=t
(ess-multi 1):  start-args=--no-readline "--no-restore"  
Making Process...Buf *R*, Proc R, Prog R
 Start File=nil, Args= --no-readline "--no-restore" .
(R): inferior-ess-language-start=options(STERM='iESS', editor='emacsclient')
 (ess-search-list: re-computing..) after 'search()
', point-max=189
(get-object-list R) ..--> (ess-get-modtime-list)
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-object-names obj=package:stats): no directory - trying names
(ess-object-names obj=package:graphics): no directory - trying names
(ess-object-names obj=package:grDevices): no directory - trying names
(ess-object-names obj=package:utils): no directory - trying names
(ess-object-names obj=package:datasets): no directory - trying names
(ess-object-names obj=package:methods): no directory - trying names
(ess-object-names obj=Autoloads): no directory - trying names
(ess-object-names obj=package:base): no directory - trying names
ess-get-modtime-list: new alist of length 9
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 1
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
 (ess-search-list: re-computing..) after 'search()
', point-max=211
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=legendre.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . $[A-Z][][A-Za-z0-9.]*$?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^$.+$\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 14
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 14
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 14
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 15
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 19
ess-BEG-of-fun after 'search-FWD (': Ini-pt 693, (p)-Ini-pt = 9
ELSE  not in setMethod() header ...
	Match,Pt:(376,391),376
ess-END-of-fun: S4=nil, beginning = 376
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 24
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 25
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 25
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 25
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 25
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 25
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 32
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 32
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 32
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 33
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 36
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 37
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 9
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 39
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=com.pcoa): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut48): no directory - trying names
(ess-object-names obj=neut48): no directory - trying names
(ess-object-names obj=neut48): no directory - trying names
(get-object-list R) ..--> (ess-get-modtime-list)
 (ess-search-list: re-computing..) after 'search()
', point-max=256
(ess-object-names obj=package:mgcv): no directory - trying names
(ess-object-names obj=package:MASS): no directory - trying names
(ess-object-names obj=package:vegan): no directory - trying names
ess-get-modtime-list: new alist of length 12
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 44
(ess-object-names obj=neut48): no directory - trying names
(ess-object-names obj=neut48$bray.mds): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=bell2003.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 46
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 46
(ess-object-names obj=neut12): no directory - trying names
(ess-object-names obj=neut12$bray.mds): no directory - trying names
(ess-object-names obj=neut12.B): no directory - trying names
(ess-object-names obj=neut12.B): no directory - trying names
(ess-object-names obj=neut12.5): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 52
(ess-object-names obj=neut12.01): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 53
(ess-object-names obj=neut12.01b): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 46
(ess-object-names obj=neut12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 46
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 47
(ess-object-names obj=neut12.10): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 49
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 49
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-BEG-of-fun after 'search-FWD (': Ini-pt 584, (p)-Ini-pt = 2
ELSE  not in setMethod() header ...
	Match,Pt:(123,143),123
ess-END-of-fun: S4=nil, beginning = 123
(ess-object-names obj=neut25.25): no directory - trying names
(ess-object-names obj=neut25.25): no directory - trying names
ess-BEG-of-fun after 'search-FWD (': Ini-pt 2086, (p)-Ini-pt = 60
ELSE  not in setMethod() header ...
	Match,Pt:(1781,1805),1781
ess-END-of-fun: S4=nil, beginning = 1781
(ess-object-names obj=tmp): no directory - trying names
ess-BEG-of-fun after 'search-FWD (': Ini-pt 2088, (p)-Ini-pt = 11
ELSE  not in setMethod() header ...
	Match,Pt:(1781,1805),1781
ess-END-of-fun: S4=nil, beginning = 1781
(ess-object-names obj=tmp): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12$bray.mds): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 72
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut24.25.12): no directory - trying names
 (ess-search-list: re-computing..) after 'search()
', point-max=276
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 72
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 72
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 72
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 72
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-BEG-of-fun after 'search-FWD (': Ini-pt 2218, (p)-Ini-pt = 15
ELSE  not in setMethod() header ...
	Match,Pt:(2145,2167),2145
ess-END-of-fun: S4=nil, beginning = 2145
(ess-object-names obj=neut24.25): no directory - trying names
(ess-object-names obj=x): no directory - trying names
ess-BEG-of-fun after 'search-FWD (': Ini-pt 2463, (p)-Ini-pt = 11
ELSE  not in setMethod() header ...
	Match,Pt:(2145,2167),2145
ess-END-of-fun: S4=nil, beginning = 2145
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 75
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-help-bogus-buffer-p *help[R](persp)*) |--> nil [searching t]
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 79
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12$bray.mds): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12$bray.mds): no directory - trying names
(ess-object-names obj=com.pcoa): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 79
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 80
(ess-object-names obj=neut24.25.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 83
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=neut_ord.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
ess-BEG-of-fun after 'search-FWD (': Ini-pt 330, (p)-Ini-pt = 10
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
(ess-object-names obj=neut24.12): no directory - trying names
(ess-object-names obj=neut24.12): no directory - trying names
(ess-object-names obj=neut24.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 87
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-BEG-of-fun after 'search-FWD (': Ini-pt 457, (p)-Ini-pt = 7
ELSE  not in setMethod() header ...
	Match,Pt:(399,422),399
ess-END-of-fun: S4=nil, beginning = 399
ess-BEG-of-fun after 'search-FWD (': Ini-pt 336, (p)-Ini-pt = 12
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(ess-object-names obj=neut24.25.12$bray.mds): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 91
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut24.25.12): no directory - trying names
ess-BEG-of-fun after 'search-FWD (': Ini-pt 1781, (p)-Ini-pt = 0
ELSE  not in setMethod() header ...
	Match,Pt:(1635,1656),1635
ess-END-of-fun: S4=nil, beginning = 1635
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 91
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-BEG-of-fun after 'search-FWD (': Ini-pt 1765, (p)-Ini-pt = 11
ELSE  not in setMethod() header ...
	Match,Pt:(1635,1656),1635
ess-END-of-fun: S4=nil, beginning = 1635
(ess-object-names obj=neut24.10.12): no directory - trying names
(ess-object-names obj=neut24.25): no directory - trying names
(ess-object-names obj=neut24.25.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 93
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 93
(ess-object-names obj=com.pcoa): no directory - trying names
ess-BEG-of-fun after 'search-FWD (': Ini-pt 334, (p)-Ini-pt = 14
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
ess-BEG-of-fun after 'search-FWD (': Ini-pt 299, (p)-Ini-pt = 2
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
ess-BEG-of-fun after 'search-FWD (': Ini-pt 391, (p)-Ini-pt = 0
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
ess-BEG-of-fun after 'search-FWD (': Ini-pt 293, (p)-Ini-pt = 2
ELSE  not in setMethod() header ...
	Match,Pt:(260,281),260
ess-END-of-fun: S4=nil, beginning = 260
(ess-object-names obj=neut24.25b.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 93
(ess-object-names obj=neut24.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 95
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 95
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut24.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 95
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 95
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 96
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 96
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 98
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 98
(ess-object-names obj=neut24d.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 98
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 12
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 98
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=bci.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)?> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
ess-BEG-of-fun after 'search-FWD (': Ini-pt 186, (p)-Ini-pt = 19
ELSE  not in setMethod() header ...
	Match,Pt:(186,204),186
ess-END-of-fun: S4=nil, beginning = 186
(ess-object-names obj=bci): no directory - trying names

(R): ess-dialect=R, buf=*R*, start-arg=nil
 current-prefix-arg=nil
(inferior-ess 0): ess-start-args=--no-readline "--no-restore"  
ess-setq-vars-default 0: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=*R*
(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 
(inferior-ess) Method #1 start=/home/tyler/rworkingdirectory/ buf=*R*
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t, comint..sender=inferior-R-input-sender
(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 
(inf-ess 2.2): start args = --no-readline "--no-restore" , inf-ess-start-args=--no-readline "--no-restore"  
(inf-ess finish [S(R), R(R,R)]
(ess-multi 0):  inf-ess-start-args=--no-readline "--no-restore" , comint-..echoes=t
(i-ess 1): buf=*R*, lang=S, comint..echo=nil, comint..sender=comint-simple-send,
(i-ess 2): buf=*R*, lang=S, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t, comint..sender=inferior-R-input-sender
(i-ess 3): curr-buf=*R*, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-multi post inf-ess: start-args=--no-readline "--no-restore" , comint-echoes=t
(ess-multi 1):  start-args=--no-readline "--no-restore"  
Making Process...Buf *R*, Proc R, Prog R
 Start File=nil, Args= --no-readline "--no-restore" .
(R): inferior-ess-language-start=options(STERM='iESS', editor='emacsclient')
ess-BEG-of-fun after 'search-FWD (': Ini-pt 186, (p)-Ini-pt = 19
ELSE  not in setMethod() header ...
	Match,Pt:(186,204),186
ess-END-of-fun: S4=nil, beginning = 186
(ess-object-names obj=bci): no directory - trying names
(get-object-list R) ..--> (ess-get-modtime-list)
 (ess-search-list: re-computing..) after 'search()
', point-max=211
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-object-names obj=package:vegan): no directory - trying names
(ess-object-names obj=package:stats): no directory - trying names
(ess-object-names obj=package:graphics): no directory - trying names
(ess-object-names obj=package:grDevices): no directory - trying names
(ess-object-names obj=package:utils): no directory - trying names
(ess-object-names obj=package:datasets): no directory - trying names
(ess-object-names obj=package:methods): no directory - trying names
(ess-object-names obj=Autoloads): no directory - trying names
(ess-object-names obj=package:base): no directory - trying names
ess-get-modtime-list: new alist of length 10
 (length alist) : 10
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 4
(ess-object-names obj=bci$pcoa): no directory - trying names
(ess-object-names obj=bci): no directory - trying names
(ess-object-names obj=bci): no directory - trying names
(get-object-list R) ..--> (ess-get-modtime-list)
 (ess-search-list: re-computing..) after 'search()
', point-max=236
(ess-object-names obj=package:MASS): no directory - trying names
ess-get-modtime-list: new alist of length 11
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 4
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 6
(ess-object-names obj=bci): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 6
(ess-object-names obj=bci): no directory - trying names
(ess-object-names obj=bci): no directory - trying names
(ess-object-names obj=bci): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=*ESS-errors*, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 17
(ess-object-names obj=neut24d.12): no directory - trying names
(ess-object-names obj=neut24d.12): no directory - trying names
(ess-object-names obj=neut24d.12): no directory - trying names
(ess-object-names obj=neut24d.12): no directory - trying names
(ess-object-names obj=neut24d.12): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 18
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-object-names obj=neut24d.12): no directory - trying names
(ess-object-names obj=bci): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
 (length alist) : 11
(ess-object-names obj=.GlobalEnv): no directory - trying names
 have re-read pos=1: -> length 28
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-BEG-of-fun after 'search-FWD (': Ini-pt 395, (p)-Ini-pt = 24
ELSE  not in setMethod() header ...
	Match,Pt:(376,391),376
ess-END-of-fun: S4=nil, beginning = 376
ess-BEG-of-fun after 'search-FWD (': Ini-pt 395, (p)-Ini-pt = 24
ELSE  not in setMethod() header ...
	Match,Pt:(376,391),376
ess-END-of-fun: S4=nil, beginning = 376
ess-BEG-of-fun after 'search-FWD (': Ini-pt 395, (p)-Ini-pt = 24
ELSE  not in setMethod() header ...
	Match,Pt:(376,391),376
ess-END-of-fun: S4=nil, beginning = 376
ess-BEG-of-fun after 'search-FWD (': Ini-pt 229, (p)-Ini-pt = 18
ELSE  not in setMethod() header ...
	Match,Pt:(1,23),1
ess-END-of-fun: S4=nil, beginning = 1
ess-BEG-of-fun after 'search-FWD (': Ini-pt 229, (p)-Ini-pt = 18
ELSE  not in setMethod() header ...
	Match,Pt:(1,23),1
ess-END-of-fun: S4=nil, beginning = 1
ess-BEG-of-fun after 'search-FWD (': Ini-pt 229, (p)-Ini-pt = 18
ELSE  not in setMethod() header ...
	Match,Pt:(1,23),1
ess-END-of-fun: S4=nil, beginning = 1

(R): ess-dialect=R, buf=*shell*, start-arg=nil
 current-prefix-arg=nil
(inferior-ess 0): ess-start-args=--no-readline "--no-restore"  
ess-setq-vars-default 0: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=*shell*
(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 
(inferior-ess) Method #3 start=/home/tyler/rworkingdirectory/ buf=*R*
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 
(inf-ess 2.2): start args = --no-readline "--no-restore" , inf-ess-start-args=--no-readline "--no-restore"  
(inf-ess finish [S(R), R(R,nil)]
(ess-multi 0):  inf-ess-start-args=--no-readline "--no-restore" , comint-..echoes=nil
(i-ess 1): buf=*R*, lang=S, comint..echo=nil, comint..sender=comint-simple-send,
(i-ess 2): buf=*R*, lang=S, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t, comint..sender=inferior-R-input-sender
(i-ess 3): curr-buf=*R*, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-multi post inf-ess: start-args=--no-readline "--no-restore" , comint-echoes=t
(ess-multi 1):  start-args=--no-readline "--no-restore"  
Making Process...Buf *R*, Proc R, Prog R
 Start File=nil, Args= --no-readline "--no-restore" .
(R): inferior-ess-language-start=options(STERM='iESS', editor='emacsclient')

Emacs  : GNU Emacs 22.1.1 (i686-pc-linux-gnu, X toolkit)
 of 2007-12-11 on blackbart
Package: ess-mode 5.3.7

current state:
==============
(setq
 ess-language "S"
 ess-dialect "R"
 ess-ask-for-ess-directory nil
 ess-ask-about-transfile nil
 ess-directory "/home/tyler/rworkingdirectory/"
 ess-keep-dump-files "always"
 ess-source-directory "/tmp/"
 )