Hi All,


I have a question DNA sequence encoding in Rle objects


#-------------------------

>From IRanges vignette


 the sequence *{*1, 1, 1, 2, 3, 3*} * can be represented as values

= *{*1, 2, 3*}* , run lengths = {3, 1, 2*}* .


#---------------------------

suppose we have a sequence of chr1 from pos 1-8     ATGTATCC. How it can be
as Rle object Rle the so that it is recognized at pos 3 for instance the
nuceoyide is G for comparison with reference genome?


Thank you very much in advance.

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