Hi Rishi,

This is a version difference between what you have on your machine and what
the script uses. Use the help() or ? function in.R to access the correct
documentation for your version.

You can either update R to get the release version of Bioconductor, or
create an alias:

rlog = rlogTransformation
On Jul 26, 2014 12:12 AM, "Rishi [guest]" <guest@bioconductor.org> wrote:

> Hello!
>
> I'm trying to use USeq's Defined Region Differential Seq (DRDS) app, which
> uses DESeq2.
>
> I installed the package directly from Bioconductor, and but when running
> the script, I get an error that the function rlog() couldn't be found. I
> looked up rlog in DESeq and only found rlogTransformation().
>
> I believe that's an error in DESeq2, but I'm kind of new to all this so
> I'm not sure. Does anyone have any suggestions on what steps to take to fix
> this?
>
> Thank you very much in advance :)
>
> Sincerely,
> Rishi
>
>  -- output of sessionInfo():
>
> > #get and save rlog transformed
> > rld = rlog(cds)
> Error: could not find function "rlog"
> Execution halted
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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