Hi Bioconductors,


Aplolgies if this is a trivial question but it is my first time to analyze
NGS data using R


can any one clarify how to get  GRanes() object with column Genes
indicating which region (exons of experiment) belongs to which gene as in
deepSNV example..


#========From deepSNV manual#=========

Suppose the bam files are in folder ./bam  and the regions of interest are
stored in a GRanges()  object with

metadata column Gene , indicating which region (typically exons for a
pulldown experiment) belongs to

which gene.

#============

Thank you very much in advance..

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