Thanks, fixed in devel.


On Tue, Jun 24, 2014 at 12:26 PM, Ryan C. Thompson <rct@thompsonclan.org>
wrote:

> Hi all,
>
> It looks like Date vectors, when used as columns in a DataFrame, are not
> printed correctly. The following example code demonstrates the problem:
>
> library(IRanges)
> x <- structure(c(16203, 16204, 16192, 16218, 16219, 16220, 16196,
> 16197, 16199, 16231, 16232, 16233, 16224, 16225, 16226, 16227
> ), class = "Date")
> df <- data.frame(date=x)
> DF <- DataFrame(df)
> base::print.data.frame(df)
> print(DF)
>
> -Ryan
>
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-unknown-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] splines   grDevices datasets  parallel  graphics  utils stats
> [8] methods   base
>
> other attached packages:
>  [1] amap_0.8-12                GMD_0.3.1.1
>  [3] gplots_2.14.0              statmod_1.4.20
>  [5] DESeq2_1.4.5               RcppArmadillo_0.4.300.8.0
>  [7] Rcpp_0.11.2                cqn_1.10.0
>  [9] quantreg_5.05              SparseM_1.03
> [11] preprocessCore_1.26.1      nor1mix_1.2-0
> [13] mclust_4.3                 baySeq_1.18.0
> [15] DESeq_1.16.0               lattice_0.20-29
> [17] locfit_1.5-9.1             edgeR_3.6.2
> [19] limma_3.20.6               arrayQualityMetrics_3.20.0
> [21] partitions_1.9-15          biomaRt_2.20.0
> [23] functional_0.4             sqldf_0.4-7.1
> [25] RSQLite.extfuns_0.0.1      RSQLite_0.11.4
> [27] DBI_0.2-7                  gsubfn_0.6-5
> [29] proto_0.3-10               GenomicFeatures_1.16.2
> [31] AnnotationDbi_1.26.0       chipseq_1.14.0
> [33] inline_0.3.13              affy_1.42.3
> [35] rtracklayer_1.24.2         Biobase_2.24.0
> [37] ShortRead_1.22.0           GenomicAlignments_1.0.1
> [39] BSgenome_1.32.0            BiocParallel_0.6.1
> [41] Rsamtools_1.16.1           Biostrings_2.32.0
> [43] XVector_0.4.0              doParallel_1.0.8
> [45] iterators_1.0.7            Matrix_1.1-4
> [47] GenomicRanges_1.16.3       GenomeInfoDb_1.0.2
> [49] RColorBrewer_1.0-5         ESSR_1.0
> [51] foreach_1.4.2              plyr_1.8.1
> [53] stringr_0.6.2              IRanges_1.22.9
> [55] BiocGenerics_0.10.0        ggplot2_1.0.0
> [57] BiocInstaller_1.14.2
>
> loaded via a namespace (and not attached):
>  [1] affyio_1.32.0        affyPLM_1.40.1       annotate_1.42.0
>  [4] base64_1.2           BatchJobs_1.2        BBmisc_1.7
>  [7] beadarray_2.14.1     BeadDataPackR_1.16.0 bitops_1.0-6
> [10] brew_1.0-6           Cairo_1.5-5          caTools_1.17
> [13] checkmate_1.0        chron_2.3-45         cluster_1.15.2
> [16] codetools_0.2-8      colorspace_1.2-4     compiler_3.1.0
> [19] digest_0.6.4         fail_1.2             Formula_1.1-1
> [22] gcrma_2.36.0         gdata_2.13.3         genefilter_1.46.1
> [25] geneplotter_1.42.0   gmp_0.5-11           grid_3.1.0
> [28] gridSVG_1.4-0        gtable_0.1.2         gtools_3.4.1
> [31] Hmisc_3.14-4         hwriter_1.3          illuminaio_0.6.0
> [34] KernSmooth_2.23-12   latticeExtra_0.6-26  MASS_7.3-33
> [37] munsell_0.4.2        polynom_1.3-8        RCurl_1.96-0
> [40] reshape2_1.4         RJSONIO_1.2-0.2      scales_0.2.4
> [43] sendmailR_1.1-2      setRNG_2013.9-1      stats4_3.1.0
> [46] survival_2.37-7      SVGAnnotation_0.93-1 tools_3.1.0
> [49] vsn_3.32.0           XML_3.98-1.1         xtable_1.7-3
> [52] zlibbioc_1.10.0
> >
>
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