Hmm... Thank you. Let me look into this and get back to you.

Kipper
On Jun 19, 2014 6:44 PM, "Justin Meskas" <jmeskas@bccrc.ca> wrote:

> Hi Kipper,
>
> Thank you for your quick reply. I had previously tried flowClean on
> uncompensated and untransformed data, and the same error was given.
>
> Thanks,
> Justin
>
> ________________________________________
> From: Kipper Fletez-Brant [cafletezbrant@gmail.com]
> Sent: June 19, 2014 3:26 PM
> To: Justin Meskas
> Cc: Ryan Brinkman; bioconductor@r-project.org
> Subject: Re: flowClean
>
> Hi Justin,
>
> I'm cc'ing the Bioc list so that others having this problem might see this.
>
> I have seen this error before. While it will take some time to diagnose,
> one comment I have is that we developed this algorithm to operate on
> uncompensated data. Try using flowClean before you do any other processing,
> and let me know how that works.
>
> Thanks,
> Kipper
>
> On Jun 19, 2014 5:42 PM, "Justin Meskas" <jmeskas@bccrc.ca<mailto:
> jmeskas@bccrc.ca>> wrote:
> Hello Kipper,
>
> I am in Dr. Ryan Brinkman's lab and I was trying to use your flowClean
> package. I have downloaded version 1.0.0 from Bioconductor and I received a
> similar error for many of my FCS files. I have attached one FCS file and
> the code I used to get the error. The error was the following:
>
> Error in if (x == 0) { : missing value where TRUE/FALSE needed
>
> I do not know if there is a problem with my data, or if I am using the
> data incorrectly with flowClean, but if there is any help you could provide
> me that would be greatly appreciated.
>
> Thank you,
> Justin
>

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