Hi,

I am trying to install package GenomicRanges version 1.17.18 and get the
following error. Is there a solution for this?

R CMD INSTALL ./GenomicRanges_1.17.18.tar.gz
* installing to library
‘/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1’
* installing *source* package ‘GenomicRanges’ ...
** libs
gcc -std=gnu99 -I/data/NYGC/Software/R/R-3.1.0/lib64/R/include -DNDEBUG
 -I/usr/local/include
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/S4Vectors/include"
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/IRanges/include"
-fpic  -g -O2  -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/data/NYGC/Software/R/R-3.1.0/lib64/R/include -DNDEBUG
 -I/usr/local/include
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/S4Vectors/include"
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/IRanges/include"
-fpic  -g -O2  -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -std=gnu99 -I/data/NYGC/Software/R/R-3.1.0/lib64/R/include -DNDEBUG
 -I/usr/local/include
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/S4Vectors/include"
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/IRanges/include"
-fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/data/NYGC/Software/R/R-3.1.0/lib64/R/include -DNDEBUG
 -I/usr/local/include
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/S4Vectors/include"
-I"/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/IRanges/include"
-fpic  -g -O2  -c transcript_utils.c -o transcript_utils.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GenomicRanges.so
IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o
installing to
/nethome/mshah/R/x86_64-unknown-linux-gnu-library/3.1/GenomicRanges/libs
** R
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'XVector', details:
  call: get(name, envir = asNamespace(pkg), inherits = FALSE)
  error: object 'setDefaultSlotValue' not found
ERROR: lazy loading failed for package ‘GenomicRanges’

Thanks,
Minita

	[[alternative HTML version deleted]]

