A short-term solution would be to download the source code and just
directly use the qvalue function.

 wget
http://bioconductor.org/packages/release/bioc/src/contrib/qvalue_1.38.0.tar.gz
 tar xzf qvalue_1.38.0.tar.gz

Then source the code in R:
source("qvalue/R/qvalue.R")

If you wanted to install, you could edit the source code. I'd imagine
deleting the function qvalue.gui and removing the references to tcltk in
the package DESCRIPTION and NAMESPACE would allow you to install it from
source.

John


On Fri, May 23, 2014 at 7:44 AM, Giuseppe Gallone <
giuseppe.gallone@dpag.ox.ac.uk> wrote:

> Hi
>
> I need the qvalue package however I don't need the TCL-TK interface.
>
> My R installation was compiled without native TCL-TK support and it is
> inconvenient for me atm to reinstall/replace etc to add support.
>
> As a consequence, as it stands it seems I cannot get qvalue to work on my
> system.
>
> Does anybody know of a way to install and run qvalue excluding the TCL-TK
> bindings?
>
> Best regards
> Giuseppe
>
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