hi Marco,

Always paste the output of sessionInfo(), as it helps maintainers diagnose
the problem.

I would guess you are using a release version of DEXSeq, but DESeq2 version
< 1.4?

Mike


On Mon, May 12, 2014 at 9:35 AM, Marco Marconi <marco.marconi@gmail.com>wrote:

> Hello, i get this strange error:
>
> dxd = DEXSeqDataSetFromHTSeq(countFiles,sampleData=sampleTable,design= ~
> sample + exon + condition:exon,flattenedfile=flattenedFile )
>
> Error in DESeqDataSet(se, design, ignoreRank = TRUE) :
>   unused argument (ignoreRank = TRUE)
>
>
> it seems to be an internal error of the DEXSeqDataSetFromHTSeq function, I
> couldn't find any workaround....
>
> thanks
>
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