Hello,
      I have following sequences for which I want to BLAST and see result only for sequences showing > 95% Query coverage and >90% identity?
 
Sequences
>1
CTTTGTCTTCCCCTATGTCATCCTCAATCTCTATGAAAGCAACAC 
>2
CTATGTCATCCTCAATCTCTATGAAAGCAACACCGCTACCATAGA
 
 
Can you please Suggest how can I select them in R in NCBI BLAST so that I get sequences showing > 95% Query coverage and >90% identity. Is there program in R to select them? I want to detect number of organism showing uniques results for given sequences.
 Thanks.
 

Dr. Ghorpade Prabhakar B.
PhD Scholar ( Veterinary Biochemistry),
IVRI,
Izatnagar,
Bareilly, U.P.,
India
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