Hi,
    The problem has been solved. Thank you very much!
Sincerely,
GUAN


2014-04-21 16:08 GMT+08:00 Hervé Pagès <hpages@fhcrc.org>:

> On 04/21/2014 12:34 AM, 管锐 wrote:
>
>> Hi,
>>
>
> Hi,
>
> Please use the "Reply All" button so the discussion stays on the mailing
> list. Thanks!
>
>
>  The IRanges I installed is version 1.22.2, the XVector depends IRanges
>>  >1.21.25.
>> Because the cluster computer is unable to connect to Internet, I used
>> the command "R CMD INSTALL XVctor" to install the packges.
>>
>
> If you must absolutely use 'R CMD INSTALL' to install packages, you
> should do it on the package source tarballs, not on the source tree.
> The source tree can contain stalled .o or .so files that will only
> cause problems. So:
>
>   R CMD INSTALL IRanges_1.22.3.tar.gz
>   R CMD INSTALL XVector_0.4.0.tar.gz
>
> in *that* order.
>
> Cheers,
> H.
>
>
>  And I have checked the LD_LIBRARY_PATH.
>> Thanks!
>>
>> Sincerely,
>> GUAN
>>
>>
>>
>> 2014-04-21 13:33 GMT+08:00 Hervé Pagès <hpages@fhcrc.org
>> <mailto:hpages@fhcrc.org>>:
>>
>>
>>     Hi,
>>
>>
>>     On 04/20/2014 08:29 PM, GUAN Rui [guest] wrote:
>>
>>         Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>         unable to load shared object
>>         '/guanrui/soft/R-3.1.0/__library/XVector/libs/XVector.__so':
>>         /guanrui/soft/R-3.1.0/library/__XVector/libs/XVector.so:
>>
>>         undefined symbol: hold_IRanges
>>               Error: loading failed
>>               Execution halted
>>               ERROR: loading failed"
>>
>>
>>     How are you trying to install this? Are you sure your version of
>> IRanges
>>     is current?
>>
>>     Always use biocLite() to install Bioconductor packages.
>>     See http://bioconductor.org/__install/
>>
>>     <http://bioconductor.org/install/>
>>
>>     Cheers,
>>     H.
>>
>>
>>
>>            -- output of sessionInfo():
>>
>>         R version 3.1.0 (2014-04-10)
>>         Platform: x86_64-unknown-linux-gnu (64-bit)
>>
>>         locale:
>>         [1] LC_CTYPE=en_US.iso885915       LC_NUMERIC=C
>>         [3] LC_TIME=en_US.iso885915        LC_COLLATE=en_US.iso885915
>>         [5] LC_MONETARY=en_US.iso885915    LC_MESSAGES=en_US.iso885915
>>         [7] LC_PAPER=en_US.iso885915       LC_NAME=C
>>         [9] LC_ADDRESS=C                   LC_TELEPHONE=C
>>         [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C
>>
>>         attached base packages:
>>         [1] stats     graphics  grDevices utils     datasets  methods
>> base
>>
>>
>>         --
>>         Sent via the guest posting facility at bioconductor.org
>>         <http://bioconductor.org>.
>>
>>
>>
>>     --
>>     Hervé Pagès
>>
>>     Program in Computational Biology
>>     Division of Public Health Sciences
>>     Fred Hutchinson Cancer Research Center
>>     1100 Fairview Ave. N, M1-B514
>>     P.O. Box 19024
>>     Seattle, WA 98109-1024
>>
>>     E-mail: hpages@fhcrc.org <mailto:hpages@fhcrc.org>
>>
>>     Phone:  (206) 667-5791
>>     Fax:    (206) 667-1319
>>
>>
>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages@fhcrc.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>

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