Hi,

This query is in reference to the following post
https://stat.ethz.ch/pipermail/bioconductor/2010-April/032869.html
where it was mentioned that "DESeq does not support paired tests  (yet)".  I have a need for performing rna-seq data analysis with matched tumor/normal pairs of data and was wondering if this capability is now available in the latest version of DESeq2.  I searched the list site and also the latest vignette, but could not find anything indicating this capability is now available in DEseq.  I would be grateful if, in case this feature is not yet available, someone could advice me how to do the analysis.  I have samples from two patients, and from each patient there is a "normal" and a "tumor" rna-seq sample data.

Thanks,

- Pankaj

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