ah, so you saw a difference in results from 1.2.4 to 1.2.10?

I didn't make any changes other than bug fixes, vignette corrections, and
adding a message about multiple factor level contrasts.

My notes say I fixed a bug regarding Cook's distance when number of samples
= number of parameters (no replicates), and I fixed a bug regarding
normalization factors and the outlier replacing function.


On Mon, Apr 7, 2014 at 3:18 PM, Carl Herrmann <c.herrmann@dkfz-heidelberg.de
> wrote:

> Hi Mike,
>
> thanks for your answer, I had seen the NEWS file, but the latest version
> that is mentionned in there is 1.2.4. What about the later versions ?
>
> Carl
>
>
> On 07/04/14 20:23, Michael Love wrote:
>
>> hi Carl,
>>
>> The changelog is in the NEWS file, this is listed on the package landing
>> page.
>>
>> or from within R you can use:
>>
>> news(Version > 1.0, package="DESeq2")
>>
>> Mike
>>
>>
>>
>>
>> On Mon, Apr 7, 2014 at 3:56 AM, Carl Herrmann <
>> c.herrmann@dkfz-heidelberg.de <mailto:c.herrmann@dkfz-heidelberg.de>>
>> wrote:
>>
>>     Hi,
>>
>>     using DESeq2 1.2.10, I am getting slightly different results than
>>     with previous version (included in Bioconductor 2.12) using
>>     otherwise unchanged parameters.
>>     I could not find a changelog for 1.2.10, but I am wondering what
>>     the difference of this latest version is w.r.t previous versions.
>>
>>     Thanks,
>>
>>     Carl
>>
>>     --     ------------------------------------------------------------
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>>     C a r l    H E R R M A N N
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>>     Universität Heidelberg
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> --
> ------------------------------------------------------------------
> C a r l    H E R R M A N N
> ------------------------------------------------------------------
> Institut für Pharmazie und Molekulare Biotechnologie
> Universität Heidelberg
> DKFZ Heidelberg - Department of Theoretical Bioinformatics
> Im Neuenheimer Feld 580
> D-69120 Heidelberg
> tel.: +49 (0) 6221 42-3612
> email : c.herrmann@dkfz.de
> web: http://biologie.univ-mrs.fr/carlherrmann
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