Hi all (and if any chance, Dr. Aryee),

I am working with 112 (56 532, 56 635) NimbleGen Promoter Medip arrays to
perform a CHARM analysis.

First of all, I wanted to obtain the qc values and have a qcReport but I
get this error message:

Error in plot.window(...) : need finite 'xlim' values

My code is:

dataDir<- getwd()
pd<- readDelim( files=pd$fileName, path=dataDir, sampleKey=pd)
rawData<- readCharm(files=pd$fileName, path=dataDir, sampleKey=pd)
qual<- qcReport(rawData, file="qcReport.pdf")

R version: 3.03
Memory: 47.2 GiB
Processor: Intel Xeon CPU E5645 @ 2.40GHz x 19
OS type: 64-bit
Disk. 146.2 GB

Has anyone have any idea about this?

Thank you in advance,

Best,

Zeynep

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