Hi All,
I am still trying to understand DiffBind.

After reading in my data, I find that the peaks component looks 
something like this:

head(myCHIP$peaks[[1]])
      V1      V2      V3         V8
1 chr19 3182597 3183033 0.10326322
2 chr19 3589475 3589990 0.09515837
3 chr19 3831795 3832326 0.06208947
4 chr19 4122385 4123105 0.06524229
5 chr19 4504682 4505416 0.15118871
6 chr19 4558434 4559635 0.22387278


The peaks were called by MACS, and looking at the code, dba pulls the 
peak score out of "column 8" and normalizes it to be between 0 and 1.

However, the peak spreadsheet has 9 columns and none of them appear to 
be normalizable to obtain the numbers in this column.  Where are these 
numbers coming from?  What do they mean?  And should I care?

Thanks,
Naomi


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