warnings() Warning messages: 1: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘AnnotationDbi_1.25.17.tar.gz’ had non-zero exit status 2: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘base64enc_0.1-1.tar.gz’ had non-zero exit status 3: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘BatchJobs_1.2.tar.gz’ had non-zero exit status 4: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘BBmisc_1.5.tar.gz’ had non-zero exit status 5: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘Biobase_2.23.6.tar.gz’ had non-zero exit status 6: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘BiocParallel_0.5.18.tar.gz’ had non-zero exit status 7: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘biomaRt_2.19.3.tar.gz’ had non-zero exit status 8: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘Biostrings_2.31.20.tar.gz’ had non-zero exit status 9: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘biovizBase_1.11.13.tar.gz’ had non-zero exit status 10: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘bitops_1.0-6.tar.gz’ had non-zero exit status 11: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘BSgenome_1.31.12.tar.gz’ had non-zero exit status 12: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘cluster_1.15.2.tar.gz’ had non-zero exit status 13: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘colorspace_1.2-4.tar.gz’ had non-zero exit status 14: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘digest_0.6.4.tar.gz’ had non-zero exit status 15: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘doParallel_1.0.8.tar.gz’ had non-zero exit status 16: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘fail_1.2.tar.gz’ had non-zero exit status 17: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘foreach_1.4.1.tar.gz’ had non-zero exit status 18: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘GenomicAlignments_0.99.32.tar.gz’ had non-zero exit status 19: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘GenomicFeatures_1.15.13.tar.gz’ had non-zero exit status 20: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘GenomicRanges_1.15.41.tar.gz’ had non-zero exit status 21: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘ggbio_1.11.15.tar.gz’ had non-zero exit status 22: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘ggplot2_0.9.3.1.tar.gz’ had non-zero exit status 23: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘gtools_3.3.1.tar.gz’ had non-zero exit status 24: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘Hmisc_3.14-3.tar.gz’ had non-zero exit status 25: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘IRanges_1.21.38.tar.gz’ had non-zero exit status 26: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘lattice_0.20-27.tar.gz’ had non-zero exit status 27: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘latticeExtra_0.6-26.tar.gz’ had non-zero exit status 28: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘MASS_7.3-31.tar.gz’ had non-zero exit status 29: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘munsell_0.4.2.tar.gz’ had non-zero exit status 30: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘NMF_0.20.5.tar.gz’ had non-zero exit status 31: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘pcaMethods_1.53.4.tar.gz’ had non-zero exit status 32: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘pkgmaker_0.20.tar.gz’ had non-zero exit status 33: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘plyr_1.8.1.tar.gz’ had non-zero exit status 34: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘Rcpp_0.11.1.tar.gz’ had non-zero exit status 35: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘RCurl_1.95-4.1.tar.gz’ had non-zero exit status 36: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘reshape2_1.2.2.tar.gz’ had non-zero exit status 37: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘rngtools_1.2.4.tar.gz’ had non-zero exit status 38: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘Rsamtools_1.15.37.tar.gz’ had non-zero exit status 39: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘RSQLite_0.11.4.tar.gz’ had non-zero exit status 40: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘rtracklayer_1.23.20.tar.gz’ had non-zero exit status 41: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘scales_0.2.3.tar.gz’ had non-zero exit status 42: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘sendmailR_1.1-2.tar.gz’ had non-zero exit status 43: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘SomaticSignatures_0.99.0.tar.gz’ had non-zero exit status 44: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘survival_2.37-7.tar.gz’ had non-zero exit status 45: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘VariantAnnotation_1.9.48.tar.gz’ had non-zero exit status 46: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘XML_3.98-1.1.tar.gz’ had non-zero exit status 47: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘XVector_0.3.7.tar.gz’ had non-zero exit status 48: In install.packages(dir(".", pattern = ".tar.gz$"), repos = NULL, ... : installation of package ‘zlibbioc_1.9.0.tar.gz’ had non-zero exit status