Hello,
I need help ,
I have a problem with (GEOquery) package a
first of all, I can't download and this the warning message

>library(GEOquery)
Setting options('download.file.method.GEOquery'='curl')

> gds1257 <- getGEO('GDS858', destdir=".")
File stored at:
./GDS1257.soft.gz
Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
  invalid 'nlines' argument
> gds1257
Error: object 'gds1257' not found

The second problem is :

If i download the gds file manually with "wget" and after that we use
the GDS2eSet i have this message :

gds <- getGEO(filename='GDS1257.soft.gz')
eset <- GDS2eSet(gds, do.log2=TRUE)
File stored at:
/tmp/RtmpY4ZgWQ/GPL96.annot.gz
Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
  invalid 'nlines' argument
> eset
Error: object 'eset' not found

waiting response  , thank you very much


Best
Cherif

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