Hello, After performing a general Bioconductor update to the new version, I
noticed that now the DEXseq package 1.8.0 is giving me different results
from prrevious version 1.6.0. As a start, its function print dots "..." on
the stdout which was not done in the previous version. This is not a big
issue, the problem is that now I am obtaining different results. Generally,
the padjust values are bigger.

For example this exon:

                    a1       a2      a3       b1      b2       b3
EXXXX        126     90      101     81      233     225

gets different results:

geneID,exonID,dispersion,pvalue,padjust,meanBase,log2fold(b/a)

old version:
EXXXX,0.0684906370633231,0.00256847378387803,0.0321347815544768,129.941383199307,-0.217272839643456

new version:
EXXXX,0.0928452378435829,0.00401881761350959,0.0587521235795571,129.941383199307,-0.213275654796358


as you can see the old one has a padjust below 0.05 and the other above
0.05, which is a big problem.


I had a look in the NEWS section of the DEXSeq package, but i couldn't find
any information about major changes.


thank you very much, regards,

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