Hi Tommaso,

could you please try:

install.packages('C:/HY-data/TORAFFAE/R_projects/Pine
Microarray/pd.110224.pinus.fa.exp.modified', repo=NULL)

and let us know what you get?

thank you,

benilton


2014-03-27 10:26 GMT-03:00 Tommaso Raffaello <tommaso.raffaello@helsinki.fi>
:

> Hi,
>
> in the pdInfoBuilder manual it愀 written "After the package is created,
> the user must install it and
> not just copy it to the library tree."
>
> I have created the annotation file with the pdInfoBuilder package,
> however I can愒 install it.
>
> The error message is:
>
> Warning in install.packages :
>    package 'C:/HY-data/TORAFFAE/R_projects/Pine
> Microarray/pd.110224.pinus.fa.exp.modified.zip' is not available (for R
> version 3.0.2)
> Installing package into 'C:/Rlibs/3.0.2'
> (as 'lib' is unspecified)
>
> >sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United
> Kingdom.1252    LC_MONETARY=English_United Kingdom.1252
> [4] LC_NUMERIC=C                            LC_TIME=English_United
> Kingdom.1252
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> base
>
> other attached packages:
>   [1] pdInfoBuilder_1.26.0 affxparser_1.34.2    RSQLite_0.11.4
> DBI_0.2-7            oligo_1.26.2
>   [6] Biostrings_2.30.1    XVector_0.2.0        IRanges_1.20.6
> Biobase_2.22.0       oligoClasses_1.24.0
> [11] BiocGenerics_0.8.0   BiocInstaller_1.12.0
>
> loaded via a namespace (and not attached):
>   [1] affyio_1.30.0         bit_1.1-11            codetools_0.2-8
> ff_2.2-12             foreach_1.4.1
>   [6] GenomicRanges_1.14.4  iterators_1.0.6       preprocessCore_1.24.0
> splines_3.0.2         stats4_3.0.2
> [11] tools_3.0.2           zlibbioc_1.8.0
>
>
> I惴 quite new in R and Bioconductor, hopefully this is not a stupid problem.
>
> Thanks!
>
> --
> Tommaso Raffaello, PhD
>
> University of Helsinki
> Department of Forest Sciences
> Latokartanonkaari 7 PO Box 27
> 00014 Helsinki (Finland)
>
> Phone number: +358 9 191 58136
> email: tommaso.raffaello@helsinki.fi
> email: tommaso.raffaello@gmail.com
>
>
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>
>
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