On Sun, Mar 23, 2014 at 9:40 AM, prabhakar ghorpade <
prabhakar_ghorpade@yahoo.co.in> wrote:

> Hello,
>
> Thanks for reply.  I am trying to run limma with user guide instructions
> but from page 11 of user guide. I am getting following error
> > targets <- readTargets("targets.txt")
> Error in file(file, "rt") : cannot open the connection
> In addition: Warning message:
> In file(file, "rt") :
>   cannot open file 'targets.txt': No such file or directory
>

The limma usersguide.pdf manual is not created during package build, so the
code in the manual isn't self-standing and you do have to create your own
targets.txt.  The LIMMA manual is so extensive that I assume this is
because it would take too long to create during package building.

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