Hi guys,
I tried to draw plots similar to cbioportal's oncoprint plot, but have no success yet. Here is an example of the oncoprint plot:
http://www.cbioportal.org/public-portal/index.do?cancer_study_id=luad_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=luad_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=luad_tcga_gistic&genetic_profile_ids_PROFILE_MRNA_EXPRESSION=luad_tcga_rna_seq_v2_mrna_median_Zscores&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&data_priority=0&case_set_id=luad_tcga_all&case_ids=&gene_set_choice=user-defined-list&gene_list=FGFR3&clinical_param_selection=null&tab_index=tab_visualize&Action=Submit
Any suggestion,
Thanks,
Ying
 		 	   		  
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