Hi there,

Some others have had similar error issues with lazy-load database. Have you
tried restarting R? That's what the users recommend in this thread:
http://r.789695.n4.nabble.com/weird-error-with-a-lazyload-RData-file-in-a-package-td4662836.html
.

I don't have the same issue with the release, nor, developer versions.

Best,


 - Joseph Paulson


On Sun, Mar 9, 2014 at 8:02 PM, guest [guest] <guest@bioconductor.org>wrote:

>
> Dear Biocondutor users,
>
> I would like to plot the heatmap using metagenomeSeq package, I used the
> same example dataset and same R scripts from package tutorial, but it has
> the error message when I do the heatmap. Please see R scripts and error
> message below:
>
> > data(mouseData)
> > trials = pData(mouseData)$diet
> > heatmapColColors = brewer.pal(12, "Set3")[as.integer(factor(trials))]
> > heatmapCols = colorRampPalette(brewer.pal(9, "RdBu"))(50)
> > plotMRheatmap(obj = mouseData, n = 200, cexRow = 0.4, cexCol = 0.4,trace
> = "none", col = heatmapCols, ColSideColors = heatmapColColors)
>
> Error in heatmap.2(mat2, ...) : lazy-load database 'P' is corrupt
> In addition: Warning messages:
> 1: In heatmap.2(mat2, ...) : restarting interrupted promise evaluation
> 2: In heatmap.2(mat2, ...) : internal error -3 in R_decompress1
>
> Thanks for the help, I really appreciate it.
>
>
>
>  -- output of sessionInfo():
>
> > sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> base
>
> other attached packages:
>  [1] metagenomeSeq_1.4.0  matrixStats_0.8.14   limma_3.18.13
>  Biobase_2.22.0       BiocGenerics_0.8.0   BiocInstaller_1.12.0
>  [7] RColorBrewer_1.0-5   vegan_2.0-10         lattice_0.20-27
>  permute_0.8-3        Heatplus_2.8.0       gplots_2.12.1
>
> loaded via a namespace (and not attached):
> [1] bitops_1.0-6       caTools_1.16       gdata_2.13.2       grid_3.0.2
>       gtools_3.3.1       KernSmooth_2.23-10 R.methodsS3_1.6.1
> [8] tools_3.0.2
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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