hi Yoong,

Installing the development version of Bioconductor packages (in which the
version number y of x.y.z is an odd number) is not so easy. You first need
to install the development version of R.  This can cause conflicts with
your release version of R.

See for example this thread here:
https://stat.ethz.ch/pipermail/bioconductor/2014-January/057198.html


Note though that the development DESeq2 version will be released in ~1
month:

http://bioconductor.org/developers/release-schedule/

Mike



On Thu, Mar 6, 2014 at 11:06 AM, Yoong [guest] <guest@bioconductor.org>wrote:

>
> Hi Mike,
>
> Just a quick question. I am having problem downloading
> DESeq2_1.3.44.tar.gz using the gz folder. I am using R studio version
> 3.0.2. Here's the error message I received:
> * installing *source* package 'DESeq2' ...
> ** libs
>
> *** arch - i386
> ERROR: compilation failed for package 'DESeq2'
> * removing 'C:/Users/yfy/Documents/R/win-library/3.0/DESeq2'
> Warning in install.packages :
>   running command '"C:/PROGRA~1/R/R-30~1.2/bin/x64/R" CMD INSTALL -l
> "C:\Users\yfy\Documents\R\win-library\3.0"
> "C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz"' had status 1
> Warning in install.packages :
>   installation of package ‘C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz’
> had non-zero exit status
>
>
> When I tried installing using the command lines, version 1.2.10 was
> installed. Is the 1.3 version ready for installation?
>
> Many thanks,
> Yoong
>
>  -- output of sessionInfo():
>
> N/A
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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