There isn't such function available for |transformList|. but you can 
write something like this:

|  setMethod("summary",
      signature=signature(object="transformList"),
      definition=function(object,...)
      {
        sapply(object@transforms,function(transMap)
                          summary(new("transform", .Data = transMap@f))
              ,simplify =FALSE)
      })
|

and then |summary(lgcl)|

Mike

On 02/26/2014 03:00 AM, bioconductor-request@r-project.org wrote:

> Hi,
>
> I would to get the parameters a, w, m, t that the estimateLogicle computes. The question may be extended to how to get parameters from a transformList or a transformMap. What I would like, is a function that returns the same information as summary applied to a user defined transform.
>
> Cheers.
>
>> >data(GvHD)
>> >samp <- GvHD[[1]]
>> >lgcl <- estimateLogicle(samp, channels = c("FL3-H", "FL4-H"))
>> >lgcl <- logicleTransform(w = 0.74, t=2^18, m =4.5)
>> >summary(lgcl)
> $a
> [1] 0
>
> $k
> transform object 'defaultLogicleTransform'
>
> $m
> [1] 4.5
>
> $t
> [1] 262144
>
> $transformationId
> [1] "defaultLogicleTransform"
>
> $w
> [1] 0.74


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